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Tn-seq

  • Open Access
    Parallel Genomics Uncover Novel Enterococcal-Bacteriophage Interactions
    Research Article | Molecular Biology and Physiology
    Parallel Genomics Uncover Novel Enterococcal-Bacteriophage Interactions

    We lack fundamental understanding of how phage infection influences bacterial gene expression and, consequently, how bacterial responses to phage infection affect the assembly of polymicrobial communities. Using parallel genomic approaches, we have discovered novel transcriptional regulators and metabolic genes that influence phage infection. The integration of whole-genome transcriptomic profiling during phage infection has revealed...

    Anushila Chatterjee, Julia L. E. Willett, Uyen Thy Nguyen, Brendan Monogue, Kelli L. Palmer, Gary M. Dunny, Breck A. Duerkop
  • Open Access
    High-Throughput Analysis of Gene Function in the Bacterial Predator <span class="named-content genus-species" id="named-content-1">Bdellovibrio bacteriovorus</span>
    Research Article | Ecological and Evolutionary Science
    High-Throughput Analysis of Gene Function in the Bacterial Predator Bdellovibrio bacteriovorus

    Bdellovibrio bacteriovorus is a predatory bacterium that can kill a wide range of Gram-negative bacteria, including many human pathogens. Given the global rise of antibiotic resistance and dearth of new antibiotics discovered in the past 30 years, this predator has potential as an alternative to traditional antibiotics. For many years,...

    Miles C. Duncan, Rebecca K. Gillette, Micah A. Maglasang, Elizabeth A. Corn, Albert K. Tai, David W. Lazinski, Robert M. Q. Shanks, Daniel E. Kadouri, Andrew Camilli
  • Open Access
    A New Mechanism for Ribosome Rescue Can Recruit RF1 or RF2 to Nonstop Ribosomes
    Research Article | Molecular Biology and Physiology
    A New Mechanism for Ribosome Rescue Can Recruit RF1 or RF2 to Nonstop Ribosomes

    Francisella tularensis is a highly infectious intracellular pathogen that kills more than half of infected humans if left untreated. F. tularensis has also been classified as a potential bioterrorism agent with a great risk for deliberate misuse. Recently, compounds that inhibit ribosome rescue have...

    Tyler D. P. Goralski, Girish S. Kirimanjeswara, Kenneth C. Keiler
  • Open Access
    Research Article
    The Essential Genome of Escherichia coli K-12
    Emily C. A. Goodall, Ashley Robinson, Iain G. Johnston, Sara Jabbari, Keith A. Turner, Adam F. Cunningham, Peter A. Lund, Jeffrey A. Cole, Ian R. Henderson
  • Open Access
    Observation
    Cyclic AMP Regulates Bacterial Persistence through Repression of the Oxidative Stress Response and SOS-Dependent DNA Repair in Uropathogenic Escherichia coli
    Roberto C. Molina-Quiroz, Cecilia Silva-Valenzuela, Jennifer Brewster, Eduardo Castro-Nallar, Stuart B. Levy, Andrew Camilli
  • Open Access
    Research Article
    Importance of Core Genome Functions for an Extreme Antibiotic Resistance Trait
    Larry A. Gallagher, Samuel A. Lee, Colin Manoil
  • Open Access
    Research Article
    Molecular Basis of Bacterial Longevity
    Kieran B. Pechter, Liang Yin, Yasuhiro Oda, Larry Gallagher, Jianming Yang, Colin Manoil, Caroline S. Harwood
  • Open Access
    Research Article
    Identification of Fitness Determinants during Energy-Limited Growth Arrest in Pseudomonas aeruginosa
    David W. Basta, Megan Bergkessel, Dianne K. Newman
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