TABLE 2

Genes with cgSNPs unique to persistent subclade A1 and F isolates

GenePredicted functionAmino acid
substitution
Branch
dcmDNA-cytosine methyltransferaseA111TA1*
tauBTaurine import ATP-binding proteinV75AA1*
ybaLInner membrane proteinA83TA1*
KLP00268_05120Nitronate monooxygenaseindelYYRaA1*
yfgFCyclic di-GMP phosphodiesteraseI211VF*
serAd-3-Phosphoglycerate dehydrogenaseA360QF*
mtnCEnolase phosphatase E1A57SF*
alkHAldehyde dehydrogenaseT227NF*
fecAFe+3 dicitrate transportQ293aF*
  • a Stop codon.