TABLE 2

Protein family content predicted in the non-core genome of the four Phytophthora ramorum lineages

Protein familyNo. of effectors in lineagea
EU1EU2NA1NA2
Ester hydrolasesb1 (1)
Peptidasesb1 (1)24 (1)
RxLR2 (2)12 (2)
ABC transporter1 (1)11
Kinases1 (1)
Methyltransferases3 (3)11 (1)2 (2)
Glycoside transferasesb1
Helicases21 (1)
Transposons368 (1)7 (1)
Other hypothetical proteins10 (4)5 (1)17 (5)22 (8)
Putative proteins without homologs5 (2)3 (3)2 (1)5 (1)
Total26173444
  • a Results for putative effector families according to van Damme et al. (113) are in boldface, and numbers of models in a category that were predicted as putative effectors with EffectorP (114) are shown in parentheses.

  • b Protein models with homologs potentially playing direct or indirect role in degradation of plant cell wall component.