TABLE 1

Candidates for gene deletion

GeneIDSecretion
prediction
TMHMMaPredicted domain (Pfam
or InterPro accession no.)
Putative protein homolog (reference)
(% identity; alignment score; E value)
atf1190180NoNonebZIP_1 (PF00170)Atf1 (45) (30.4; 200; 1.4e−15)
atf2156289NoNonebZIP_1 (PF00170)Atf1 (45) (31.1; 180; 5.7e−14)
gcn485517NoNonebZIP_1 (PF00170)GCN4 (62) (50; 100; 1.4e−3)
pps1115037YesNoneNone predictedMP88 (40) (29; 190; 7e−17)
aqp1167023Yes6Aquaporin-like (IPR023271)AQY1 (63) (32; 309; 3.7e−31)
chi1189685NCSbNoneNone predictedNone
igp1154866YesNoneNone predictedNone
ico1155573YesNoneIsochorismatase (PF00857)YcaC (64) (61.9; 655; 2.2e−84)
  • a TMHMM, Transmembrane Helix Prediction based on a hidden Markov Model.

  • b Putative secretion by noncanonical secretion (NCS) pathway.