TABLE 2

Genes containing indels or SNPs that led to amino acid changes, identified from the whole-genome variant calling analysis between 180/2 and 180/15a

Locus tag
in 180/2
GeneProductbChange in aa sequence of 180/15 relative to 180/2
100purNPhosphoribosyl-glycinamideG81A
254rpsJ30S ribosomal protein S10Y58D
285Hypothetical proteinA81S
314cdsAPhosphatidate cytidylyltransferaseM14I
335adhPAlcohol dehydrogenase 1M210V
403fabKEnoyl-[acyl-carrier-protein] reductaseI1029T
449Nitronate monooxygenaseI55M
512glnAGlutamine synthetaseF22L
645nhaKSodium, potassium, lithium and rubidium/H+ antiporterG190D
741VanZ family proteinC149W
996Hypothetical proteinH38R
1121clcAH+/Cl exchange transporterM131I
1138ptsHPhosphocarrier protein HPrI14V
1172Formate/nitrate transporterA211E
1194glnPGlutamine transport system permease proteinS662A
1234SpF43_sRNAY31C
1306alaSAlanine-tRNA ligaseE18A
1387apbEFAD:protein FMN transferaseM52I
1404LPXTG cell wall anchor domain-containing proteinΔK112-Q119; G125K, E126T, P127E, E130V,
K131N, I133D; ΔQ135-P178
1491rafKRaffinose import ATP-binding proteinI227T
1616dnaBDNA helicaseC375R
1760fepD_2Ferric enterobactin transport system permease proteinS248G
1863rpoCDNA-directed RNA polymerase subunit betaD76E
1878acyPAcylphosphataseV4I
1887rsgASmall ribosomal subunit biogenesisG40S
2045aspSAspartate tRNA ligaseE51V
2100dltDd-Alanyl-lipoteichoic acid biosynthesis proteinD151E
  • a Results for the raffinose pathway gene rafK are in boldface.

  • b FAD, flavin adenine dinucleotide; FMN, flavin mononucleotide.