TABLE 3

SNP typing of post-travel CTX-M-EC

StrainaSample collection point (days post-travel)MLSTPhylogenetic group
3b371193bB2
3b4711930B2
3c32811930B2
3d156119363B2
3d256119352B2
3d35611930B2
3d456119363B2
4a6769bD
4b130695D
4b230694D
4b330694D
4b430694D
4c149694D
4c449694D
4e1152694D
4e2152695D
4e4152694D
5.2a4 post-Uzbekistan38bD
5.2b4 post-Uzbekistan382D
5.2c4 post-Uzbekistan382D
5.2e4 post-Uzbekistan382D
5.2f4 post-Uzbekistan382D
5a13 post-India, 35 post-Uzbekistan48dA
5a23 post-India, 35 post-Uzbekistan4648A
5a33 post-India, 35 post-Uzbekistan4248A
5a43 post-India, 35 post-Uzbekistan3948A
5b18 post-India4848A
5b38 post-India3348A
5b48 post-India2648A
5c428 post-India4648A
5e391 post-India386D
5e491 post-India386D
5f3183 post-India1276548A
8b21610bA
8b316101A
8b416101A
8c140102A
8c2401043A
8c340102A
8c440102A
8d158101A
8d2581013331A
8d4581013323A
9b114261719F
9b2142617bF
9c13526179F
9c23526175F
9c33526177F
9c43526171F
9d19126172F
9d39126172F
9d49126177F
9e115226174F
9e215226170F
9e315226176F
9e415226171F
9f121026173F
9f221026177F
9f321026175F
9f421026174F
12a13435A
12a2343bA
12a33430A
12a43430A
12b121430A
12b221430A
12b321430A
12b421431A
12c129430A
12c229430A
12c329430A
12c429430A
12d156431A
12d256433A
12d356432A
12d456432A
12e1b115430A
12e2115430A
12e3115431A
12e4115431A
16b240131bB2
16c1911314B2
16c2911313B2
16c4911312B2
16e11791313B2
16e21791314B2
16e31791313B2
16e41791316B2
20a371625NGc
20a47162bNG
20b1421620NG
20b2421620NG
20b3421620NG
20b4421620NG
  • a Isolate naming system: e.g., 3b3, where “3” stands for volunteer 3, “b” stands for the second post-travel fecal sample, and the following digit “3” stands for the third colony pick from the sample.

  • b Reference strain for SNP comparisons for any given volunteer. SNPs are displayed as superscripts after the ST.

  • c NG, no phylogenetic group assigned to the Warwick MLST.

  • d Second reference strain where 2 STs are present (volunteer 5). SNPs are displayed as superscripts before the ST.