TABLE 1

Selection of gene CNVs in L. infantum field isolatesa

Gene_idbNormalized mean read depth of:Annotation
Linf_ZK27Linf_LLM56Linf_02A
LinJ.08.07800.961.122.18Amastin-like protein
LinJ.09.02005.729.868.1Putative ATG8/AUT7/APG8/PAZ2
LinJ.10.0490*18.120.5532.92GP63, leishmanolysin
LinJ.12.066111.6313.466.1Conserved hypothetical protein
LinJ.15.12401.963.823.87Putative nucleoside transporter 1
LinJ.19.08209.5814.399.09Putative ATG8/AUT7/APG8/PAZ2
LinJ.23.13302.453.441.46Hypothetical protein, unknown function
LinJ.26.snoRNA13.253.774.91ncRNAc
LinJ.26.snoRNA154.24.746.21ncRNA
LinJ.26.snoRNA23.594.345.51ncRNA
LinJ.26.snoRNA33.924.676.04ncRNA
LinJ.26.snoRNA44.0356.28ncRNA
LinJ.26.snoRNA53.944.946.2ncRNA
LinJ.26.snoRNA64.415.046.61ncRNA
LinJ.26.snoRNA74.645.186.9ncRNA
LinJ.29.0060*2.041.080.96Putative tryptophanyl-tRNA synthetase
LinJ.29.0070*2.171.021.01QA-SNARE protein putative
LinJ.29.0080*2.071.080.99Conserved hypothetical protein
LinJ.29.0090*2.091.031.05Putative Ras-like small GTPases
LinJ.29.16101.894.451.81Conserved hypothetical protein
LinJ.29.25703.22.411.92Putative 60S ribosomal protein L13
LinJ.30.2990*0.983.572.01G3P dehydrogenase
LinJ.31.14701.981.961.17Hypothetical protein, unknown function
LinJ.31.193010.4116.7915.38Ubiquitin-fusion protein
LinJ.31.23901.041.040Helicase-like protein
LinJ.33.036020.8713.1912.22Heat shock protein 83-1
LinJ.34.10202.111.222.16Putative amastin-like surface protein
LinJ.34.16804.076.093.99Putative amastin-like surface protein
LinJ.36.01903.15.627.22Elongation factor 2