TABLE 2

Selection of gene CNVs in L. donovani field isolatesa

Gene_idbNormalized mean read depth of:Annotation
Ldo_CH33Ldo_BPK26Ldo_LTB
LdBPK_0400066006.170.944.8Hypothetical protein, conserved
LdBPK_05001770014.0712.329.35snoRNA
LdBPK_08001250010.689.387Amastin-like protein
LdBPK_0800136007.464.694.1Amastin-like protein
LdBPK_0800159007.2110.486.93Cathepsin L-like protease
LdBPK_0900069008.634.229.44Putative ATG8/AUT7/APG8/PAZ2
LdBPK_1000093004.4915.245.36Folate/biopterin transporter, putative
LdBPK_12001350010.187.5218.83Surface antigen protein 2, putative
LdBPK_12001460018.738.815.23Hypothetical protein
LdBPK_19001430011.457.2413.77Putative ATG8/AUT7/APG8/PAZ2
LdBPK_2700215002.114.163.06Amino acid transporter, putative
LdBPK_2700265003.241.135.69Amino acid aminotransferase, putative
LdBPK_27003010021.9410.676.6818S, ribosomal, SSU, RNA
LdBPK_27003013020.8110.76.4rRNA
LdBPK_27003014021.210.736.7428S, ribosomal, RNA, LSU-α
LdBPK_27003015019.969.976.1828S, ribosomal, RNA, LSU-β
LdBPK_27003016017.779.655.9328S, ribosomal, RNA, LSU-δ, M2
LdBPK_27003017021.210.746.1928S, ribosomal, RNA, LSU-ζ, M6
LdBPK_27003018017.6810.165.3728S, ribosomal, RNA, LSU-ε, M4
LdBPK_2800107003.081.012.48Major surface protease gp63, putative
LdBPK_2800350008.5914.668.04Heat shock protein hsp70, putative
LdBPK_3000209002.347.561.88p1/s1 nuclease
LdBPK_3100097007.2210.636.01Amastin, putative
LdBPK_3100167004.38.485.34Sodium stibogluconate resistance protein
LdBPK_3200437003.282.025.44HIBCH-like protein
LdBPK_3300087008.5613.647.76Heat shock protein 83-17
LdBPK_340015500*0.071.180.36Amastin-like surface protein, putative
LdBPK_3400156003.195.123.15Amastin-like surface protein, putative
LdBPK_3400158001.780.923.36Amastin-like surface protein, putative
LdBPK_3400174002.751.040.8Amastin-like surface protein, putative
LdBPK_3400235003.031.879.92Amastin-like surface protein, putative
LdBPK_340024100*1.4726.055.71Amastin surface glycoprotein, putative
LdBPK_350056400*1148.78Hypothetical protein
LdBPK_350056500*1.021.0747.88Hypothetical protein, conserved
LdBPK_350056600*1.040.9844.76Protein-only RNase P, putative
LdBPK_350056700*1.221.136.57Ribosomal protein L37e, putative
LdBPK_350056800*1.031.0343.11RNA pseudouridylate synthase, putative
LdBPK_350056900*1.010.9145.34Hypothetical protein
LdBPK_350057000*0.920.9641.41Hypothetical protein
LdBPK_350057100*1.050.8742.65Hypothetical protein, unknown function
LdBPK_350057200*0.970.9643.22Biopterin transporter, putative
LdBPK_350057300*1.060.8944Hypothetical protein