TABLE 3

Gene CNVs in the Spanish L. infantum isolates Linf_LLM45 and Linf_LLM56

GeneNormalized mean read depth of:RatioDeltaAnnotation
Linf_LLM45Linf_LLM56
LinJ.02.06901.62.10.70.5Hypothetical protein, unknown function
LinJ.03.04201.41.90.70.6Putative 60S acidic ribosomal protein P2
LinJ.04.01601.42.00.70.6Hypothetical protein
LinJ.04.01802.21.12.01.1Surface antigen-like protein
LinJ.05.snoRNA37.98.40.90.6ncRNAa
LinJ.05.snoRNA57.78.80.91.1ncRNA
LinJ.09.02008.87.81.11.0ATG8/AUT7/APG8/PAZ2, cytoskeleton
LinJ.10.049015.416.70.91.3GP63, leishmanolysin
LinJ.11.11103.31.91.71.4Putative 60S ribosomal protein L28
LinJ.11.11202.11.02.11.1Conserved hypothetical protein
LinJ.13.033011.310.01.11.3α-Tubulin
LinJ.14.04001.83.80.52.0Conserved hypothetical protein
LinJ.15.snoRNA415.313.81.11.5ncRNA
LinJ.17.009021.121.81.00.8Elongation factor 1-α
LinJ.18.15004.03.11.30.9Putative P-type H+-ATPase
LinJ.19.08209.911.30.91.4Putative ATG8/AUT7/APG8/PAZ2
LinJ.19.13502.73.80.71.0Putative glycerol uptake protein
LinJ.22.snoRNA15.74.71.21.0ncRNA
LinJ.26.snoRNA105.44.91.10.5ncRNA
LinJ.26.snoRNA155.44.71.10.6ncRNA
LinJ.26.snoRNA75.85.21.10.7ncRNA
LinJ.29.15701.01.60.70.5Conserved hypothetical protein
LinJ.29.15801.01.50.70.5Conserved hypothetical protein
LinJ.29.16102.83.70.80.9Conserved hypothetical protein
LinJ.29.22401.21.80.60.6Conserved hypothetical protein
LinJ.30.06903.63.01.20.6Putative 40S ribosomal protein S30
LinJ.30.16602.01.41.40.6Conserved hypothetical protein
LinJ.30.35501.02.00.51.0Conserved hypothetical protein
LinJ.30.35601.02.00.51.0S-Adenosylmethionine synthetase
LinJ.31.04603.01.02.92.0Putative amastin
LinJ.31.16602.92.11.40.83-Ketoacyl-CoA thiolase-like protein
LinJ.31.193016.113.41.22.7Ubiquitin-fusion protein
LinJ.32.19102.81.81.61.0Putative iron superoxide dismutase
LinJ.33.03605.811.30.55.6Heat shock protein 83-1
LinJ.34.10105.43.81.41.6Putative amastin-like surface protein
LinJ.34.10203.11.22.61.9Putative amastin-like surface protein
LinJ.34.16804.16.10.72.0Putative amastin-like surface protein
LinJ.34.173010.914.40.83.5Putative amastin-like surface protein
LinJ.36.01906.05.01.21.0Elongation factor 2
LinJ.36.16801.82.50.70.6Universal minicircle sequence bd. protein
LinJ.36.30101.52.30.70.840S ribosomal protein S24e
  • a ncRNA, noncoding RNA.