TABLE 1

Genes selected for further characterization include those with a large different in fitness in the rhizospheres of wild-type (Col-0) and immunocompromised (deps) rhizospheresa

Gene IDGene
name
Predicted
function
No. of
insertion
sites
Log2FC
(clay)
P
value
Log2FC
(Col-0)
P
value
Log2FC
(deps)
P
value
Log2FC
(Col-0/
deps)
WCS365_05599wapANuclease610.60.493−2.90.0403.10.003−6.02
WCS365_04646cioACytochrome oxidase subunit50.50.974−1.80.0122.50.001−4.25
WCS365_04136gtsBGlucose ABC transporter permease50.40.662−6.60.090−1.40.166−5.18
WCS365_05664morACyclic di-GMP phosphodiesterase480.70.169−2.40.0042.90.079−5.29
WCS365_00305spuCPutrescine aminotransferase133.00.071−2.80.0924.90.045−7.68
WCS365_05132uvrAExcinuclease280.60.431−2.40.0145.20.013−7.60
WCS365_04639katBCatalase180.20.701−1.40.1345.40.012−6.75
WCS365_04320colRResponse regulator61.70.147−2.90.002−3.70.0650.84
  • a Log2FC of the fitness of Col-0 relative to deps was calculated by first normalizing fitness data to the fitness in clay and then taking the ratio. ID, identifier.