TABLE 2 

Comparison of antibiotic resistances predicted by in silico and SRL test results against the EDL reference

AntibioticNo. of in silico predictions vs EDL results% ConcordanceNo. of SRL vs EDL resultsa% ConcordanceNo. of in silico vs EDL resultsa% Concordance
TotalTraitsFalse positiveFalse negativeDiscordantTotalDiscordantTotalDiscordant
Penicillin30826943797.73131794.66308797.73
Cefoxitin30812331498.70216398.61308498.70
Ciprofloxacin30812223598.38219498.17308598.38
Moxifloxacin30811820299.35
Amikacin308712122392.53
Gentamicin30829000100.00243199.593080100.00
Tobramycin3087770797.7379198.73308797.73
Erythromycin30810553897.40260896.92308897.40
Clindamycin3089532598.381721094.19308598.38
Tetracycline3082110199.68133199.25308199.68
Tigecycline308003399.03
Fusidic acid3081410199.68175597.14308199.68
Linezolid3080000100.00194199.483080100.00
Mupirocin308905598.38
Rifampin3081210199.68225498.22308199.68
Trimethoprim30810000100.00
Teicoplanin120003397.5087396.55120397.50
Vancomycin1200000100.00118199.151200100.00
Daptomycin1200000100.00
Total5,2881,07550257598.582,2524997.823,6284298.84
  • a Only results for antibiotics tested by SRLs were compared.