TABLE 3 

41 sRNAs that are downregulated in human serum versus TSB

sRNA designationsRNA gene name or featureTSB expression value (RPKM)aSerum expression value (RPKM)Fold change
SAUSA300s277tsr13509.650.43−1,187.67
SAUSA300s113sbrC1,834.126.3−291.07
SAUSA300s266tsr2122.440.42−290.6
SAUSA300s296tsr3292.330.44−210.63
SAUSA300s171Sau-656941,077.46250.83−163.77
SAUSA300s049RsaC8,079.7277.42−104.37
SAUSA300s004Purine riboswitch2,277.9045.36−50.22
SAUSA300s303tsr393,132.5164.48−48.58
SAUSA300s162Teg25as6,668.30191.51−34.82
SAUSA300s125ssr476,272.84256.03−24.5
SAUSA300s052RsaF35,374.061,713.79−20.64
SAUSA300s275tsr11398.9320.01−19.94
SAUSA300s301tsr37390.3923.36−16.72
SAUSA300s292tsr28513.0631.91−16.08
SAUSA300s297tsr338,987.32592.2−15.18
SAUSA300s062Sau-31141.329.7−14.57
SAUSA300s022RNAIII66,968.705,178.15−12.93
SAUSA300s283tsr19162.0413.93−11.63
SAUSA300s118ssr16478.4749.19−9.73
SAUSA300s302tsr38251.1727.55−9.12
SAUSA300s280tsr16254.4230.88−8.24
SAUSA300s095Teg1161,149.05155.21−7.4
SAUSA300s211JKD6008sRNA07359.068−7.38
SAUSA300s287tsr23970.48133.71−7.26
SAUSA300s054RsaH4,110.36629.99−6.52
SAUSA300s087Teg41481.0174.55−6.45
SAUSA300s078rsaOT17,890.112,790.22−6.41
SAUSA300s127ssr543,245.19584.15−5.56
SAUSA300s051RsaE2,929.20534.76−5.48
SAUSA300s074rsaOI721.93135.52−5.33
SAUSA300s237JKD6008sRNA258100.8920.87−4.83
SAUSA300s298tsr34200.1741.54−4.82
SAUSA300s267tsr385.0119.21−4.43
SAUSA300s114sbrE424.58102.21−4.15
SAUSA300s073Sau-6072265.8264.27−4.14
SAUSA300s276tsr12295.2973.2−4.03
SAUSA300s291tsr27135.2234.48−3.92
SAUSA300s204RsaX04265.5870.09−3.79
SAUSA300s086Teg3950.3913.67−3.69
SAUSA300s141ssr15374.6921.06−3.54
SAUSA300s010T-box riboswitch487.82149.37−3.27
  • a RPKM, reads per kilobase of transcript per million mapped reads.