TABLE 2 

42 sRNAs that are upregulated in human serum versus TSB

sRNA designationsRNA gene name or featureTSB expression value (RPKM)bSerum expression value (RPKM)Fold change
SAUSA300s289tsr2560.6735,374.06583.02
SAUSA300s046rsaOG90.9934,267.77376.61
SAUSA300s053RsaG80.853,463.0942.83
SAUSA300s119ssr24130.783,217.8624.6
SAUSA300s153Teg1671.051,174.0116.52
SAUSA300s066Sau-63104.991,690.9516.11
SAUSA300s030sprC149.582,144.3214.34
SAUSA300s026ssrS2,991.1637,212.8112.44
SAUSA300s005ffs929.7411,188.0012.03
SAUSA300s148Teg23256.62,950.5911.5
SAUSA300s050RsaD2,737.9130,473.5911.13
SAUSA300s226JKD6008sRNA17350.05539.7910.78
SAUSA300s013Lysine riboswitch659.936,917.8410.48
SAUSA300s260JKD6008sRNA39616.13150.269.31
SAUSA300s294tsr30470.644,383.009.31
SAUSA300s027sprA11,097.349,306.358.48
SAUSA300s233JKD6008sRNA20596.96717.537.4
SAUSA300s003T-box riboswitch158.51,156.137.29
SAUSA300s094Teg10819.39132.546.83
SAUSA300s099Teg12437.1245.196.61
SAUSA300s110sprA336.05233.316.47
SAUSA300s282tsr18105.4653.56.2
SAUSA300s024GlmS ribozyme185.531,064.955.74
SAUSA300s117ssr812.1367.95.6
SAUSA300s038sprG3191.041,049.335.49
SAUSA300s120ssr28188.031,012.535.39
SAUSA300s028sprA299.08504.625.09
SAUSA300s210JKD6008sRNA071136.39691.135.07
SAUSA300s100Teg124469.392,313.984.93
SAUSA300s002SAMa riboswitch56.06268.44.79
SAUSA300s031sprD804.113,810.914.74
SAUSA300s021SAM riboswitch239.09941.213.94
SAUSA300s075rsaOL273.51,010.423.69
SAUSA300s091Teg6095.9350.093.65
SAUSA300s034sprF31,227.974,261.303.47
SAUSA300s016T-box riboswitch316.761,059.283.34
SAUSA300s084Teg2715,788.2252,571.033.33
SAUSA300s042rsaOC26.7588.893.32
SAUSA300s135ssr100322.651,050.223.26
SAUSA300s163Teg28as46.74149.533.2
SAUSA300s079rsaOU085.01
SAUSA300s151Teg1340204.13
  • a SAM, S-adenosylmethionine.

  • b RPKM, reads per kilobase of transcript per million mapped reads.