TABLE 1 

Statistics of cDNA sequencing reads and their alignments on the B. phytofirmans PsJN genome

SampleTotal no. of nucleotidesTotal no. of RNA-seq readsTotal no. of trimmed readsaTotal no. of rRNA readsTotal no. of readsbTotal no. (%) of mapped Ps readsc
Control1,865,634,92736,581,07720,759,3631,141,64719,617,71693,404 (0.48)
Stress 12,156,419,99542,282,74524,171,4661,358,71622,812,750382,477 (1.70)
Stress 61,825,100,28035,786,28020,023,3181,036,06518,987,25356,604 (0.30)
Stress 121,926,749,45137,779,40120,048,0991,266,24518,781,85464,047 (0.34)
  • a Data indicate the total numbers of reads after quality assessment, trimming, and poly(A) removal.

  • b Data indicate the total numbers of reads after removal of the rRNA sequences which proceed to the mapping step.

  • c Data indicate the total numbers (percentages) of reads mapped on the B. phytofirmans PsJN (Ps) genome.