TABLE 2 

BLAT score ratio gene content comparison

Gene content similarity and is-cDNAFamily hit(s)PfamE value(s)
Present in PNW VGIIa/c
        is-cDNA 1Transmembrane amino acid transporter protein familyPF01490.131.90E−33
        is-cDNA 2Endoribonuclease L-PSPPF01042.168.30E−39
        is-cDNA 3Aminotransferase class I and II domainPF00155.165.20E−47
        is-cDNA 4No significant matches
        is-cDNA 5Zinc finger double domain, fungus-specific transcription factor domainPF13465.1, PF04082.134.4E−7, 2.3E−16
        is-cDNA 6Major facilitator superfamilyPF07690.115.80E−11
        is-cDNA 7Peptidase family M20/M25/M40, peptidase dimerization domainPF01546.23, PF07687.93E−6, 4.2E−9
        is-cDNA 8Major facilitator superfamily, fungus-specific transcription factor domainPF07690.11, PF04082.135.5E−29, 9.6E−12
        is-cDNA 9No significant matches
        is-cDNA 10Arylsulfotransferase (ASST) familyPF14269.19.90E−14
        is-cDNA 11Major facilitator superfamilyPF07690.117.20E−23
        is-cDNA 12Phosphatidylethanolamine-binding protein domainPF01161.155.70E−18
        is-cDNA 13Fungus-specific transcription factor domainPF04082.132.90E−05
        is-cDNA 14Glycosyl hydrolase family 32 N-terminal domain, glycosyl hydrolase family 32 C-terminal domainPF00251.15, PF08244.71.8E−51 4.8E−10
        is-cDNA 15No significant matches
        is-cDNA 16Alcohol dehydrogenase GroES-like domain, zinc-binding dehydrogenasePF08240.7, PF13602.18.5E−6, 2.8E−19
        is-cDNA 17No significant matches
Present in PNW VGIIb
        is-cDNA 18E1-E2 ATPase, haloacid dehalogenase-like hydrolase3.6E−47, 3.1E−21
        is-cDNA 19No significant matches
        is-cDNA 20No significant matches
Present in PNW VGIIa
        is-cDNA 21Sugar (and other) transporterPF00083.191.20E−94
        is-cDNA 22Alcohol dehydrogenase GroES-like domain, zinc-binding dehydrogenasePF08240.7, PF00107.211.6E−28, 1.6E−16
        is-cDNA 23Major facilitator superfamilyPF07690.111.20E−17
        is-cDNA 24No significant matches
        is-cDNA 25Aldo/keto reductase familyPF00248.161.30E−52
        is-cDNA 26Protein of unknown function, putative collagen-binding domain of a collagenasePF13204.1, PF12904.22.1E−54, 7.4E−19
        is-cDNA 27Sugar (and other) transporterPF00083.193.70E−93
        is-cDNA 28Alcohol dehydrogenase GroES-like domain, zinc-binding dehydrogenasePF08240.7, PF00107.215.3E−28, 1.2E−15
        is-cDNA 29Fungus-specific transcription factor domain, fungal Zn(2)-Cys(6) binuclear cluster domainPF04082.13, PF00172.132E−16, 1.8E−4
        is-cDNA 30No significant matches
        is-cDNA 31No significant matches
        is-cDNA 32Aspartyl proteasePF09668.53.30E−05
        is-cDNA 33Helicase conserved C-terminal domain, DEAD/DEAH box helicasePF00271.26, PF00270.244.6E−7, 1E−4
Present in PNW VGIIc
        is-cDNA 34Fungus-specific transcription factor domainPF04082.132.50E−11
        is-cDNA 35Lyase, adenylosuccinate lyase C terminusPF00206.15, PF10397.41.5E−47, 2.6E−18
        is-cDNA 36Sugar (and other) transporterPF00083.195.40E−80
        is-cDNA 37No significant matches
        is-cDNA 38No significant matches
        is-cDNA 39Protein of unknown functionPF11175.31.40E−80
        is-cDNA 40Sugar (and other) transporterPF00083.198.30E−63
        is-cDNA 41Protein of unknown functionPF11175.36.70E−83
        is-cDNA 42No significant matches
        is-cDNA 43No significant matches
Present in PNW VGIIa/b/c and missing in half of VGII STs
        is-cDNA 44Glycosyl hydrolase family 3 N-terminal domain, fibronectin type III-like domainPF00933, PF143101.9E−70,7.5E−20
        is-cDNA 45Alpha-l-rhamnosidase N-terminal domain, bacterial alpha-l-rhamnosidasePF08531, PF0559204.7E−36, 9.5E−166
        is-cDNA 46Sugar (and other) transporterPF000832.00E−57
        is-cDNA 47No significant matches
Missing in PNW and present in half of VGII STs
        is-cDNA 48Fungus-specific transcription factor domainPF04082.131.90E−23
        is-cDNA 49Proline dehydrogenasePF01619.134.60E−31
        is-cDNA 50Transmembrane amino acid transporter proteinPF01490.132.8E−17, 1E−9