TABLE 4 

Numbers of various products encoded by the five intracommunity-transferred regions

Putative categoryPutative assignment/function of gene productsNo. of products in:
CL02 region:CL03 region:
12345
Conjugative transfer machineryTraD (coupling protein)11111
TraG1111
TraJ1111
TraK11111
TraM11111
TraN11111
TraO11
RecombinasesSerine site-specific recombinases211
Tyrosine site-specific recombinases/integrases122
Element transfer/partitioning/segregationTOPRIM-like, DUF3991211
TOPRIM primase111
Excisionase11
Single-stranded-DNA-binding protein family32
ATPases—chromosome partitioning/CobQ/CobB/MinD/  ParA nucleotide binding11111
PRTRC system ParB family111
Chromosome segregation protein SMC11
Relaxase/mobilization nuclease111
Other common proteins/domainsRibD C-terminal domain, dihydrofolate reductase111
DUF409911111
DUF4133111
DUF4134111
DUF3408111
PH domain protein111
Transcriptional regulation/DNA bindingRteC family11
TetR family111
Other transcriptional regulator211
Other helix-turn-helix domain DNA-binding proteins1141
Selfish genes/element survivalPutative toxin11121
Putative antitoxin /immunity protein12141
Anti-restriction protein11111
DNA methylase13
Potential fitness genesFimbria synthesis2
MACPF domain containing1
M23 peptidase family231
Type VI secretion system (T6SS)a
  • a ✓, the region is present in the organism.