[Data set S4A Branch 1 set of representative RdRps] (AAC06252.1|Enterobacteria_phage_M11:0.27788663,ACT66752.1|Escherichia_virus_FI:0.19657541,(APG77009.1|Beihai_levi_like_virus_16:0.55700442,(APG77119.1|Changjiang_levi_like_virus_3:0.57612159,(APG77179.1|Shahe_levi_like_virus_2:0.73650974,((APG77201.1|Hubei_levi_like_virus_9:0.87233808,APG77252.1|Wenling_levi_like_virus_2:0.71317163)0.747305:0.09305405,(NP_042307.1|Pseudomonas_phage_PP7:0.91088853,(APG77217.1|Hubei_levi_like_virus_13:0.93994702,(((APG77055.1|Beihai_levi_like_virus_9:0.99112405,(APG77043.1|Beihai_levi_like_virus_4:0.63026976,YP_007002852.1|Caulobacter_phage_phiCb5:0.74812243)0.641010:0.19918015)0.999912:0.29858662,(AMQ23516.1|unidentified_ssRNA_virus:1.01391664,AMQ23539.1|unidentified_ssRNA_virus:1.18807679)0.807331:0.19284461)0.998896:0.33304941,(APG77280.1|Wenzhou_levi_like_virus_1:1.58543946,((((APG77166.1|Shahe_narna_like_virus_6:0.83707816,YP_009336548.1|Shahe_narna_like_virus_5:0.76394569)0.999888:0.51154221,((AHF48625.1|Sclerotinia_sclerotiorum_mitovirus_9:0.44095517,AAR01970.1|Cryphonectria_cubensis_mitovirus_1a:0.68789815)1.000000:0.37573865,((AGC24233.1|Sclerotinia_sclerotiorum_mitovirus_4:0.42128818,AHI43534.1|Fusarium_circinatum_mitovirus_2_1:0.54420484)1.000000:0.49015269,(AHF48622.1|Sclerotinia_sclerotiorum_mitovirus_6:0.94228916,BAD72871.1|Helicobasidium_mompa_mitovirus_1_18:0.84606765)0.809622:0.10888921)0.612107:0.05914034)0.999854:0.21005919)0.430477:0.04354366,(((ALD89121.1|Rhizoctonia_solani_mitovirus_2:0.48389184,(AAR01973.1|Cryphonectria_cubensis_mitovirus_2a:0.57467215,ALM62241.1|Soybean_leaf_associated_mitovirus_1:0.55653449)0.884787:0.08223913)0.999997:0.22972518,(AHF48627.1|Sclerotinia_sclerotiorum_mitovirus_11:0.61343610,ALD89101.1|Macrophomina_phaseolina_mitovirus_2:0.64977094)1.000000:0.26416852)0.936148:0.13212123,(ALD89117.1|Rhizoctonia_solani_mitovirus_12:0.75905159,ALM62240.1|Soybean_leaf_associated_mitovirus_5:1.03789484)1.000000:0.43131085)0.851234:0.10673126)1.000000:0.81327032,(YP_009342444.1|Wuhan_horsefly_Virus_3:2.61328102,(YP_009342297.1|Wuchang_cockroach_Virus_4:1.84500020,(YP_009241365.1|Phytophthora_infestans_RNA_virus_4:2.25517515,(APG77272.1|Wenling_narna_like_virus_6:2.37007659,(((YP_009336843.1|Hubei_narna_like_virus_7:1.00558110,((YP_009333316.1|Beihai_narna_like_virus_9:0.50331279,YP_009333251.1|Beihai_narna_like_virus_6:0.25728403)1.000000:0.63035887,(YP_009344979.1|Wuhan_spider_virus_7:0.93549676,(YP_009337331.1|Changjiang_narna_like_virus_1:0.93985817,(YP_009336520.1|Wenzhou_narna_like_virus_3:0.46835598,YP_009333144.1|Beihai_narna_like_virus_3:0.42717312)0.999981:0.31907672)0.983518:0.20133011)0.999962:0.26826761)0.745872:0.13875096)0.864600:0.11631766,(YP_009333241.1|Beihai_narna_like_virus_13:1.03979933,APG77163.1|Wenzhou_shrimp_virus_10:1.22871795)0.998240:0.46962115)0.941682:0.12867497,(YP_009333280.1|Beihai_narna_like_virus_20:2.58420344,YP_009337133.1|Wenling_narna_like_virus_4:1.31830109)0.339560:0.00009450)0.999997:0.49357398)0.744397:0.17502775)0.401487:0.12860881)0.710301:0.37642146)0.930082:0.33184945)1.000000:1.16606005)0.587979:0.06599182)1.000000:0.38731973)0.711547:0.12023170)0.638123:0.11375737)0.631484:0.08236458)0.952543:0.07669224)0.534363:0.04785613)1.000000:0.29794014);
[Data set S4B Branch 2 set of representative RdRps] 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_1:0.06416183)1.000000:0.22978066,(YP_003275951.1|HMO_Astrovirus_A:0.12167388,(SIP85308.1|Mamastrovirus_13:0.12379859,ANS57171.1|Bovine_astrovirus_CH13_NeuroS1:0.14603380)1.000000:0.06981291)1.000000:0.09647967)0.999959:0.10339670)0.881146:0.10756212)1.000000:0.64813629,(YP_009336874.1|Hubei_leech_virus_1:0.72365204,YP_009330019.1|Hubei_astro_like_virus:0.74214421)0.999944:0.31677108)0.983685:0.14620306)0.995257:0.22419205,(AHA86933.1|Bufivirus_UC1:0.86912064,(((YP_001427386.1|Telosma_mosaic_virus:0.07109270,AOR06520.1|Cowpea_aphid_borne_mosaic_virus:0.06679493)1.000000:0.15775223,(((AGH25889.1|Carrot_thin_leaf_virus:0.11112960,(NP_056867.1|Tobacco_vein_mottling_virus:0.17635412,YP_009305422.1|Euphorbia_ringspot_virus:0.13766388)0.999998:0.06408415)0.999642:0.04644895,((YP_009259366.1|Wild_onion_symptomless_virus:0.13802696,ADP00834.1|Turnip_mosaic_virus:0.26679204)1.000000:0.07045978,(AFU35736.1|Onion_yellow_dwarf_virus:0.20783817,NP_741959.1|Wild_potato_mosaic_virus:0.15858832)0.988970:0.04357387)0.825879:0.02509727)0.968361:0.02849979,(AGY36218.1|Zucchini_tigre_mosaic_virus:0.19785939,ABV21734.1|Cocksfoot_streak_virus:0.21453019)0.997953:0.03742100)0.990055:0.04441139)0.999549:0.17415815,(YP_224077.1|Cucumber_vein_yellowing_virus:0.54280907,(YP_009175089.1|Rice_necrosis_mosaic_virus:0.25051024,ANF06857.1|Chinese_yam_necrotic_mosaic_virus:0.27031539)1.000000:0.39217174)0.675604:0.12490435)1.000000:0.48545114)0.997667:0.16200722)0.999995:0.19215136,(((YP_009336500.1|Hubei_tetragnatha_maxillosa_virus_7:0.78915955,(YP_009345058.1|Wuhan_nido_like_virus_1:0.57888697,YP_009342322.1|Wuhan_insect_virus_19:0.43550494)1.000000:0.84438492)1.000000:0.53147831,((((AOG30811.1|Rousettus_bat_coronavirus:0.03093799,(YP_009072438.1|Bat_Hp_betacoronavirus_Zhejiang2013:0.04169633,(ABD75543.1|Human_coronavirus_HKU1:0.10977815,(YP_001351683.1|Scotophilus_bat_coronavirus_512:0.03275342,YP_009328933.1|NL63_related_bat_coronavirus:0.07871415)1.000000:0.17857143)0.998851:0.04560770)0.874778:0.06347142)1.000000:0.55683913,((YP_009214659.1|Rat_arterivirus_Jilin2014:0.35324809,AIL48081.1|Simian_hemorrhagic_fever_virus:0.12201750)1.000000:1.16070810,(YP_803213.1|White_bream_virus:0.48153076,(P0C6V7.1|Berne_virus:0.37143615,(AOZ57153.1|Shingleback_nidovirus_1:0.24245550,YP_009344970.1|Xinzhou_toro_like_virus:0.24651248)0.999964:0.15900475)0.892091:0.11578063)0.999978:0.38795893)0.992947:0.29595673)0.830387:0.18063572,((YP_009333332.1|Beihai_Nido_like_virus_2:0.53412081,APG77328.1|Wenzhou_Nido_like_virus_1:0.64874009)1.000000:0.99033030,(YP_009333345.1|Beihai_Nido_like_virus_1:0.78707489,YP_007697629.1|Hana_virus:0.40451613)0.999275:0.38872349)0.856251:0.18880883)1.000000:1.14284532,((((APG75951.1|Hubei_tetragnatha_maxillosa_virus_6:0.32350535,YP_009329970.1|Hubei_sobemo_like_virus_26:0.46117872)0.999997:0.23403905,((YP_009337747.1|Wenling_sobemo_like_virus_1:0.95458756,(YP_009329979.1|Hubei_sobemo_like_virus_12:0.62565625,YP_009329992.1|Hubei_sobemo_like_virus_11:0.67611198)0.661643:0.10652284)0.936488:0.21988550,(YP_009342461.1|Wuhan_heteroptera_virus_2:0.40005135,YP_009330007.1|Hubei_sobemo_like_virus_5:0.60890312)1.000000:0.60301439)0.915214:0.13937035)0.932647:0.12737123,(YP_009342442.1|Wuhan_insect_virus_17:0.88586452,YP_009337869.1|Wenzhou_shrimp_virus_9:0.49148689)0.999980:0.27114832)0.999248:0.20860912,((ALR87185.1|Phasey_bean_mild_yellows_virus:0.15453281,(AAK49964.1|Beet_chlorosis_virus:0.15738556,(Q5NDM9.2|Poinsettia_latent_virus_isolate_Germany_Siepen:0.21423501,YP_009238501.1|Ixeridium_yellow_mottle_virus_1:0.17925648)0.916076:0.03873144)0.441888:0.02725086)0.999998:0.40465505,(APG75910.1|Hubei_sobemo_like_virus_4:1.97789620,YP_009330048.1|Hubei_sobemo_like_virus_3:0.99828654)0.963163:0.38208480)1.000000:0.46796642)0.999952:0.33395027)0.995113:0.20942656)0.999664:0.24427847,((YP_009272910.1|Fusarium_poae_mycovirus_2:0.56356250,(BAT50982.1|Rosellinia_necatrix_mycovirus_2_W1032_S6:0.25886475,(ANR02697.1|Rhizoctonia_solani_mycovirus_1:0.32931193,(YP_009182156.1|Penicillium_aurantiogriseum_foetidus_like_virus:0.11947727,CCD33025.1|Aspergillus_foetidus_slow_virus_2:0.09801679)0.999999:0.12125280)0.477840:0.04096075)1.000000:0.42073995)1.000000:0.97440703,(((ACE80203.1|Duck_hepatitis_A_virus_3:0.49738935,YP_008083730.1|Sebokele_virus_1:0.52130181)1.000000:0.45974958,((YP_009133208.1|Falcovirus_A1:0.83240918,(APA29017.1|Picornaviridae_sp_rodent_Ds_PicoV_IM2014:0.80192439,ALL35266.1|Shrew_hepatovirus:0.49598757)0.989453:0.15724887)0.792273:0.08564769,(AAT01719.1|Foot_and_mouth_disease_virus_type_A:0.75086328,((ALR74732.1|Phacovirus_Pf_CHK1_PhV:0.35779062,(APA29022.1|Picornaviridae_sp_rodent_Ee_PicoV_NX2015:0.19535670,AAL69623.2|Simian_agent_5:0.19384405)1.000000:0.23279519)1.000000:0.23608696,(AOQ26209.1|Rosavirus_C:0.48994138,(YP_009165595.1|Kobuvirus_cattle_Kagoshima_1_22_KoV_2014_JPN:0.23505410,(BAO02685.1|Kobuvirus_sewage_Aichi:0.38540968,YP_004782207.1|Mouse_kobuvirus_M_5_USA_2010:0.01999523)0.999004:0.07360674)1.000000:0.304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a_maxillosa_virus_3:0.55915342,AOX15251.1|Burke_Gilman_virus:0.45535356)0.998745:0.13813092)1.000000:0.13769383,((YP_004935363.1|Spodoptera_exigua_iflavirus_1:0.89709931,(YP_009328891.1|Euscelidius_variegatus_virus_1:0.47702610,ACN94442.1|Nasonia_vitripennis_virus:0.60156410)0.998463:0.15121654)0.838523:0.09991036,(YP_009336529.1|Hubei_picorna_like_virus_44:0.85359133,YP_009337372.1|Hubei_picorna_like_virus_43:0.82303112)0.999808:0.18511973)0.999999:0.11264684)0.999804:0.06996775,((((YP_009336530.1|Changjiang_picorna_like_virus_9:0.27107440,YP_009336760.1|Changjiang_crawfish_virus_3:0.39059337)1.000000:0.30086304,(APG77443.1|Hubei_picorna_like_virus_23:0.46241892,AHD25455.1|Himetobi_P_virus:0.47848802)1.000000:0.24510548)0.995767:0.08506109,(YP_009336627.1|Wenling_picorna_like_virus_4:0.84181842,(APG77985.1|Hubei_picorna_like_virus_15:0.69692715,(APG78622.1|Wuhan_insect_virus_11:0.49465918,(YP_009333496.1|Beihai_picorna_like_virus_84:0.44299029,(YP_009333603.1|Beihai_picorna_like_virus_82:0.33302021,(APG78059.1|Wenzhou_shrimp_virus_4:0.32023880,(YP_009333524.1|Beihai_picorna_like_virus_90:0.34899584,YP_004063985.1|Mud_crab_dicistrovirus:0.22208783)1.000000:0.28382022)0.983588:0.07673162)0.867452:0.02660829)0.974104:0.09106159)0.519211:0.04495687)0.881554:0.05655195)0.847215:0.04949503)0.999999:0.10397381,(YP_009333541.1|Beihai_picorna_like_virus_105:0.85463392,(AIS73137.1|Arivirus_1:0.65027766,YP_009333580.1|Beihai_picorna_like_virus_99:0.83103998)0.994261:0.17253482)0.484951:0.04054767)0.999997:0.07773997)0.992764:0.06136896)0.996424:0.06109269)0.999982:0.07464775)0.947642:0.06109982)0.989244:0.13663678)0.971254:0.13725264)0.999053:0.13567602)0.690316:0.09889933)1.000000:0.79469289)0.999761:0.29909772)1.000000:0.52954788);
[Data set S4C Branch 3 set of representative RdRps] (AJR19147.1|Lake_Sinai_virus:0.02146208,AJR19138.1|Lake_Sinai_virus:0.07079725,((YP_009336561.1|Hubei_tombus_like_virus_40:0.38520097,(((APG76342.1|Hubei_odonate_virus_12:0.13745816,APG76481.1|Hubei_odonate_virus_12:0.18604181)1.000000:0.33803507,(YP_009342467.1|Wuhan_insect_virus_21:0.30656893,(YP_009011225.1|Anopheline_associated_C_virus:0.31290241,AKH40306.1|Dansoman_virus:0.37366376)0.835526:0.04687253)0.999963:0.09289807)0.932972:0.04974239,(YP_009337803.1|Hubei_tombus_like_virus_43:0.55705174,(YP_009337397.1|Sanxia_tombus_like_virus_9:0.38803674,((YP_009337115.1|Wenling_tombus_like_virus_4:0.20976524,YP_009342270.1|Wenzhou_tombus_like_virus_18:0.22428222)0.591457:0.03823181,(YP_009336498.1|Beihai_tombus_like_virus_19:0.56674423,YP_009337262.1|Wenling_tombus_like_virus_5:0.23140567)0.602718:0.06544120)1.000000:0.25096987)0.995014:0.08631943)1.000000:0.12637565)0.980354:0.04741694)0.932613:0.11694344,(YP_009336516.1|Hubei_tombus_like_virus_39:0.64181262,((APG76626.1|Wenzhou_noda_like_virus_5:0.91491133,(((YP_009329890.1|Beihai_sphaeromadae_virus_3:0.41084472,YP_009330099.1|Hubei_noda_like_virus_17:0.53083099)1.000000:0.21194474,(((YP_009337377.1|Sanxia_water_strider_virus_16:0.49586133,AIO11151.1|Mosinovirus:0.35941986)0.983748:0.11849362,(APG76200.1|Beihai_noda_like_virus_20:1.30286746,YP_009337806.1|Shuangao_insect_virus_11:0.58172078)0.998713:0.25465364)0.926343:0.09604498,(YP_009336545.1|Beihai_sphaeromadae_virus_2:0.69167250,ADK97710.1|Tetnovirus_2:0.69351699)0.494929:0.06207881)0.994089:0.07938340)0.981629:0.09641311,((APG76597.1|Wenzhou_noda_like_virus_1:0.45873975,APG76175.1|Beihai_noda_like_virus_9:0.41268685)1.000000:0.27537352,(APG76325.1|Hubei_noda_like_virus_1:1.35142073,(APG76502.1|Hubei_noda_like_virus_4:1.02956570,(YP_009337425.1|Wenzhou_bivalvia_virus_3:0.55475753,ADK55577.1|Plasmopara_halstedii_virus_A:0.53232440)0.999902:0.23870558)0.442057:0.06079200)0.660684:0.09222022)0.999950:0.10640072)0.911023:0.15464294)1.000000:0.51724576,(YP_009337677.1|Beihai_tombus_like_virus_15:0.83850107,((((((AJF96723.1|Hepatitis_C_virus:0.06914878,(AJF19150.1|Hepatitis_C_virus:0.05851854,AJF19154.1|Hepatitis_C_virus:0.03263139)0.532584:0.01138982)0.825145:0.02380404,(AID60273.1|Hepatitis_C_virus:0.08281031,AGV23521.1|Hepatitis_C_virus:0.10909321)0.733077:0.02900280)1.000000:0.49600380,(ALG04340.1|Human_pegivirus_2:0.39227128,(AGK41011.1|Bat_pegivirus:0.30425067,(AGK41018.1|Bat_pegivirus:0.19622979,ANO81671.1|Porcine_pegivirus:0.26082183)0.944394:0.07858667)0.999688:0.19759278)0.984401:0.20082001)1.000000:0.78838314,((YP_009179401.1|Shuangao_insect_virus_7:0.43618078,(YP_009351861.1|Menghai_flavivirus:0.28350127,(NP_043135.1|Tick_borne_encephalitis_virus:0.15473501,AIJ19432.1|Stratford_virus:0.18421912)0.999877:0.12902633)1.000000:0.63269741)1.000000:0.78137159,(YP_009179220.1|Xingshan_cricket_virus:0.75389921,YP_009179226.1|Beihai_barnacle_viurs_1:1.20393744)0.623376:0.18254947)0.999851:0.37108361)1.000000:0.69120141,(((YP_009336849.1|Beihai_tombus_like_virus_9:0.71584629,(APG76327.1|Hubei_tombus_like_virus_22:0.85117261,(YP_009345007.1|Wuhan_spider_virus_8:0.85603257,YP_009337096.1|Hubei_tombus_like_virus_13:0.46720975)0.999996:0.23969308)0.340538:0.05997603)0.931530:0.09783209,((YP_009337707.1|Hubei_tombus_like_virus_24:0.84502586,(YP_009337777.1|Beihai_tombus_like_virus_5:0.53258637,YP_009336735.1|Hubei_tombus_like_virus_12:0.45774500)0.999999:0.18000264)0.000000:0.00000696,(ALM62236.1|Soybean_leaf_associated_ssRNA_virus_2:0.87085155,(YP_009337172.1|Changjiang_crawfish_virus_7:0.59048009,((YP_009342267.1|Wenzhou_tombus_like_virus_2:0.38335310,(YP_001039884.1|Nootka_lupine_vein_clearing_virus:0.51196009,YP_009336967.1|Hubei_tombus_like_virus_2:0.50305060)0.601050:0.06144391)0.967452:0.08116833,(YP_009342296.1|Wenzhou_tombus_like_virus_7:0.62663883,YP_009336790.1|Hubei_tombus_like_virus_8:0.42261763)0.981471:0.12049105)0.985243:0.07535631)1.000000:0.17541679)0.983918:0.09528733)0.872234:0.04818364)1.000000:0.20927316,(((AQY59907.1|Statovirus_E1:0.49699733,AQY59901.1|Statovirus_B1:0.50993193)0.955833:0.14434410,(AQY59899.1|Statovirus_A4:0.51568722,(AQY59903.1|Statovirus_C1:0.47311280,AQY59905.1|Statovirus_D1:0.56684738)0.874104:0.11837226)0.588021:0.07894771)1.000000:0.97317164,YP_009336934.1|Hubei_tombus_like_virus_29:0.93193934)0.711833:0.11319999)0.676166:0.07533287)0.999963:0.19996512,((((YP_009046830.1|Yerba_mate_endornavirus_1:1.60504765,((((AKN08994.1|Caucasus_prunus_virus:0.24460970,YP_009022064.1|Gaillardia_latent_virus:0.46641762)0.992831:0.25519351,(NP_783203.1|Oyster_mushroom_spherical_virus:0.74828952,(AKQ48574.1|Bee_Macula_like_virus:0.86425388,YP_667844.1|Malva_mosaic_virus:0.79498702)0.776162:0.15502627)0.953435:0.26819523)1.000000:0.93099964,(AMQ23297.1|Mangifera_indica_latent_virus:1.49636111,YP_009337393.1|Wenzhou_hepe_like_virus_2:1.37395632)0.868801:0.30954152)0.990020:0.31784657,(BAQ08234.1|Persimmon_virus_B:0.85732152,(ACJ68815.1|Lilac_ring_mottle_virus:1.03884554,((YP_009337715.1|Hubei_virga_like_virus_17:0.51156752,NP_671718.1|Paprika_mild_mottle_virus:0.77112554)0.662198:0.10236099,(AMO03225.1|Marsac_virus:0.66880619,(YP_009351834.1|Fort_Crockett_virus:0.42209024,YP_009345002.1|Wuhan_insect_virus_9:0.57747180)1.000000:0.32515648)0.994887:0.14110574)0.707137:0.08920199)0.636771:0.11985576)0.999964:0.32797964)0.681034:0.18658020)0.999976:0.49504132,((YP_009336573.1|Hubei_tombus_like_virus_33:0.70220479,YP_009337407.1|Changjiang_tombus_like_virus_20:0.74610668)0.999738:0.30010824,((YP_009342288.1|Wenzhou_tombus_like_virus_15:0.47807074,(YP_009333161.1|Hubei_tombus_like_virus_32:0.34848760,YP_009337052.1|Changjiang_tombus_like_virus_19:0.57622262)0.611961:0.14528845)1.000000:0.48678719,(YP_009342257.1|Wenzhou_tombus_like_virus_16:0.42410040,YP_009336758.1|Beihai_tombus_like_virus_14:0.73316498)1.000000:0.47072263)0.999971:0.32571145)0.996505:0.26079000)0.873188:0.12429500,(YP_009336606.1|Beihai_tombus_like_virus_16:1.01017327,((AQM32759.1|Agaricus_bisporus_virus_16:1.43954278,((YP_009337316.1|Hubei_yanvirus_like_virus_1:0.45224049,(YP_009342252.1|Wenzhou_yanvirus_like_virus_2:0.11079668,YP_009337285.1|Wenzhou_bivalvia_virus_2:0.18186670)1.000000:0.34188609)0.999866:0.34953534,(YP_009337303.1|Shahe_isopoda_virus_3:0.74194789,YP_009342261.1|Wenzhou_yanvirus_like_virus_1:0.62686229)1.000000:0.63861956)0.999721:0.34423026)0.994638:0.26694722,((YP_009337414.1|Beihai_zhaovirus_like_virus_2:0.64592234,YP_009337629.1|Changjiang_zhaovirus_like_virus_1:0.85670817)0.999987:0.36664428,((YP_009337419.1|Beihai_zhaovirus_like_virus_1:0.49656472,(YP_009337663.1|Hubei_zhaovirus_like_virus_2:0.45350182,YP_009337645.1|Hubei_zhaovirus_like_virus_1:0.50227256)0.999995:0.20528670)1.000000:0.33534870,(YP_009337427.1|Beihai_zhaovirus_like_virus_3:0.67039299,(YP_009337670.1|Wenling_zhaovirus_like_virus_1:0.86199284,(YP_009337445.1|Beihai_zhaovirus_like_virus_4:0.36964476,YP_009337406.1|Beihai_zhaovirus_like_virus_5:0.40614310)0.993970:0.14295315)0.967291:0.15993451)0.604753:0.13786555)0.988137:0.23272523)1.000000:0.83848986)0.915022:0.18112746)0.766898:0.06026824)0.999919:0.11625560,(((AOG30801.1|Towan_virus:0.58092382,YP_009344965.1|Jingmen_tombus_like_virus_2:0.53084052)0.999969:0.24624716,(((APG76480.1|Hubei_tombus_like_virus_35:0.45407377,YP_009337040.1|Changjiang_tombus_like_virus_21:0.35756008)0.533359:0.04942730,(YP_009337674.1|Changjiang_tombus_like_virus_22:0.37415458,(YP_009337712.1|Hubei_tombus_like_virus_36:0.29915340,(YP_009342273.1|Wenzhou_tombus_like_virus_17:0.34032287,AHA86931.1|Brandmavirus_UC1:0.46179831)0.977876:0.10387004)0.994901:0.08947431)0.887741:0.09104361)1.000000:0.21807198,(YP_009336793.1|Beihai_tombus_like_virus_17:0.74211652,YP_009336952.1|Beihai_tombus_like_virus_18:0.45621830)1.000000:0.39479651)0.990366:0.12434240)1.000000:0.30281811,(YP_009333186.1|Hubei_tombus_like_virus_37:1.57906201,((YP_009337226.1|Beihai_weivirus_like_virus_20:0.20595360,(YP_009337063.1|Beihai_weivirus_like_virus_18:0.10340720,YP_009336943.1|Beihai_weivirus_like_virus_17:0.22441553)0.999248:0.16943316)1.000000:0.73973210,((YP_009337141.1|Beihai_weivirus_like_virus_15:0.56208240,YP_009336992.1|Beihai_weivirus_like_virus_16:0.46962870)0.999997:0.24802106,((APG78108.1|Beihai_weivirus_like_virus_21:0.41583436,(YP_009337101.1|Beihai_weivirus_like_virus_13:0.35961845,YP_009337183.1|Beihai_weivirus_like_virus_12:0.39961633)1.000000:0.28951754)1.000000:0.34039452,(AOG17585.1|Symbiodinium_ssRNA_virus_TR74740_c13_g1_i1:0.49343915,(APG78099.1|Beihai_weivirus_like_virus_10:0.39736126,((YP_009337162.1|Beihai_weivirus_like_virus_4:0.10416995,YP_009337004.1|Beihai_weivirus_like_virus_5:0.13710389)1.000000:0.26212510,(YP_009336960.1|Beihai_weivirus_like_virus_2:0.11468935,YP_009337128.1|Beihai_weivirus_like_virus_1:0.15062731)1.000000:0.26079302)0.991395:0.08802470)1.000000:0.20747039)0.545548:0.07195749)0.999232:0.15305900)0.999994:0.30728425)0.999915:0.41302768)0.989537:0.34798529)0.989833:0.14078500)0.954391:0.10763089)0.827151:0.10703830)1.000000:0.22158960)0.934082:0.12155200)0.999208:0.15606930)1.000000:0.67918518);
[Data set S4D Branch 4 set of representative RdRps] (ABK35363.1|Pseudomonas_phage_phi6:0.24328717,(NP_690817.1|Pseudomonas_phage_phi13:0.12635579,|Pseudomonas_phage_phiYY:0.12824258)1.000000:0.24966893,((AOW41972.1|Picobirnavirus_sp_:2.63217535,(((APG79215.1|Wenling_reo_like_virus_2:1.87969227,(APG79084.1|Beihai_reo_like_virus_2:1.97378704,(AIU99579.1|Jiangxi12_B14_orthoreovirus:0.17923772,(YP_009020578.1|Bush_viper_reovirus:0.20289240,(AFG73673.1|Reovirus_GCRV104:0.30071367,YP_009351850.1|Fall_chinook_aquareovirus:0.26119955)1.000000:0.15193980)0.743865:0.08577024)0.999232:0.82143290)0.998688:0.77003659)0.875778:0.41426174,(((AGZ92010.1|Changuinola_virus:0.19647451,(YP_002925132.1|Stretch_Lagoon_orbivirus:0.21037054,(YP_003896058.1|Great_Island_virus:0.19518982,YP_009158901.1|Chobar_Gorge_virus:0.21668329)0.997112:0.05997378)0.873043:0.09504171)1.000000:0.68354470,(APG79087.1|Hubei_reo_like_virus_14:0.58362502,(APG79155.1|Hubei_tetragnatha_maxillosa_virus_9:0.39013874,APG79108.1|Hubei_lepidoptera_virus_4:0.45290361)0.818101:0.14504731)0.999996:0.45304535)0.999277:0.33159911,(APG79149.1|Hubei_reo_like_virus_10:1.77888368,AFX61456.1|Human_rotavirus_A:0.98515895)0.999992:0.71402138)0.664294:0.22953480)0.995547:0.45607462,((((YP_009345028.1|Xingshan_nematode_virus_6:0.68031812,(APG76023.1|Hubei_toti_like_virus_14:0.48025760,APG75984.1|Beihai_toti_like_virus_2:0.40263075)1.000000:0.41492698)1.000000:0.82905941,(APG75991.1|Beihai_toti_like_virus_1:0.47599380,(ANZ93873.1|Culex_tritaeniorhynchus_totivirus:0.24835863,BAJ21511.1|Omono_River_virus:0.13107717)1.000000:0.53642604)1.000000:0.76944209)0.898052:0.20061057,(((APG75982.1|Beihai_toti_like_virus_5:0.62385594,(YP_009336872.1|Hubei_toti_like_virus_16:0.62027127,YP_009333402.1|Beihai_sea_slater_virus_3:0.56580432)0.999401:0.20284240)0.909299:0.16122467,(APG75979.1|Wenzhou_toti_like_virus_2:0.91722890,APG75995.1|Beihai_toti_like_virus_3:1.25779200)0.934429:0.18785275)1.000000:0.43989571,((YP_009337111.1|Wenzhou_crab_virus_5:0.73443653,BAJ23141.1|Rhizophagus_sp_RF1_medium_virus:1.21660508)0.999965:0.43789762,(APG76000.1|Hubei_toti_like_virus_22:1.08058688,YP_004581250.1|Piscine_myocarditis_virus_AL_V_708:1.35528596)0.525763:0.15985287)0.962068:0.12298686)0.999997:0.34488283)0.998158:0.22741864,((YP_001976142.1|Alternaria_alternata_virus_1:0.36953202,(YP_009272952.1|Fusarium_poae_alternavirus_1:0.32424763,ABX79997.1|Aspergillus_mycovirus_341:0.21615152)0.999977:0.29033983)1.000000:1.32539003,((YP_009333465.1|Beihai_sesarmid_crab_virus_7:2.04717971,((BAT62484.1|Red_clover_powdery_mildew_associated_totivirus_4:0.37067875,(YP_009182195.1|Red_clover_powdery_mildew_associated_totivirus_7:0.60948087,YP_001497151.1|Black_raspberry_virus_F:0.55184253)0.890344:0.13594605)1.000000:0.83977748,(ABC86751.1|Trichomonas_vaginalis_virus_1:1.01018253,(AHK06416.1|Leishmania_RNA_virus_2:0.69190414,(NP_047560.1|Sphaeropsis_sapinea_RNA_virus_2:0.49709861,YP_009032633.1|Beauveria_bassiana_victorivirus_NZL_1980:0.63899594)0.998983:0.21824919)0.999903:0.29916524)0.999975:0.31431704)0.990846:0.22964668)0.816530:0.14777448,(((YP_003800003.1|Circulifer_tenellus_virus_1:0.57079831,(YP_009336493.1|Hubei_toti_like_virus_10:0.33521967,APG76025.1|Hubei_toti_like_virus_7:0.57698294)1.000000:0.26870535)1.000000:0.53037491,(YP_009342430.1|Wuhan_insect_virus_28:1.15883148,(AEX87902.1|Phytophthora_infestans_RNA_virus_3:0.68629073,((YP_009253995.1|Fusarium_poae_dsRNA_virus_2:0.50696199,((YP_009342055.1|Trichoderma_atroviride_mycovirus:0.31755333,(AEZ54148.1|Fusarium_virguliforme_dsRNA_mycovirus_1:0.24591721,AEZ54146.1|Fusarium_virguliforme_dsRNA_mycovirus_2:0.24204966)0.999992:0.12430795)1.000000:0.21881237,(ALD89097.1|Macrophomina_phaseolina_double_stranded_RNA_virus_2:0.33193392,(YP_009253997.1|Fusarium_poae_dsRNA_virus_3:0.28580686,(YP_003288789.1|Fusarium_graminearum_dsRNA_mycovirus_3:0.22210256,(YP_006331065.1|Sclerotinia_sclerotiorum_dsRNA_mycovirus_L:0.06545561,YP_009115498.1|Botrytis_cinerea_RNA_virus_1:0.07047715)1.000000:0.16830428)0.929312:0.06555430)1.000000:0.17581218)0.999897:0.08812381)0.690240:0.03883382)1.000000:0.13532196,((AOX49922.1|Sclerotium_rolfsii_RNA_virus_1:0.46224065,YP_003359178.1|Diplodia_scrobiculata_RNA_virus_1:0.53940433)0.488408:0.05662716,(AMU19320.1|Papaya_meleira_virus:0.72563358,CAJ34335.2|Phlebiopsis_gigantea_mycovirus_dsRNA_2:0.40941288)0.976451:0.12335766)0.941519:0.09293407)0.999986:0.22783927)1.000000:0.36210243)0.998393:0.23170369)0.732782:0.08427186,((ANR02705.1|Rhizoctonia_solani_megabirnavirus_1:0.87015578,ANR02704.1|Rhizoctonia_solani_mycovirus_3:0.65573599)1.000000:0.73275388,(CBY84993.1|Tolypocladium_cylindrosporum_virus_2:1.13389772,AKU48197.1|Brassica_campestris_chrysovirus_1:0.99228956)0.676620:0.14093808)0.999465:0.23094777)0.796791:0.10293517)0.999999:0.31288746)0.553215:0.10056786)0.991653:0.38027231)0.952887:0.54636205)1.000000:1.40857146,(NP_524561.1|Pseudomonas_phage_phi8:1.13899122,(YP_002600763.2|Pseudomonas_phage_phi2954:0.40624512,NP_690823.1|Pseudomonas_phage_phi12:0.19404380)1.000000:0.83194167)0.987162:0.39024641)1.000000:0.63602309);
[Data set S4E Branch 5 set of representative RdRps] (ALD89130.1|Rhizoctonia_solani_negative_stranded_virus_2:0.05601263,ALD89111.1|Rhizoctonia_solani_negative_stranded_virus_3:0.05964076,(ALD89129.2|Rhizoctonia_solani_negative_stranded_virus_1:0.11675391,(YP_009272911.1|Fusarium_poae_negative_stranded_virus_1:0.41109469,(((YP_053236.1|Lettuce_ring_necrosis_virus:0.11213089,(AAK69629.2|Ranunculus_white_mottle_virus:0.11833499,Q8BCV9.1|Mirafiori_lettuce_virus_LS301_O:0.10611709)0.946010:0.03301712)0.999999:0.16764377,(YP_089661.1|Citrus_psorosis_virus:0.27411657,BAV13384.1|Blueberry_mosaic_associated_virus:0.20795529)1.000000:0.16328997)1.000000:0.59386092,((YP_009337854.1|Shahe_yuevirus_like_virus_1:0.36436970,YP_009330274.1|Beihai_sesarmid_crab_virus_3:0.37966922)1.000000:1.74351188,((((YP_009344984.1|Xinzhou_nematode_virus_5:0.85023935,(YP_009337428.1|Sanxia_atyid_shrimp_virus_4:0.45742401,((YP_009333151.1|Wenling_chuvirus_like_virus_2:0.38887481,YP_009337860.1|Wenling_crustacean_virus_13:0.37199906)0.978034:0.07821436,((YP_009177701.1|Bole_Tick_Virus_3:0.25145285,YP_009177722.1|Wuhan_Tick_Virus_2:0.32346798)1.000000:0.24438815,(YP_009182177.1|Imjin_River_virus_1:0.31045717,(AJG39080.1|Shuangao_Fly_Virus_1:0.40112326,(YP_009337904.1|Hubei_chuvirus_like_virus_1:0.26887846,(YP_009337089.1|Hubei_chuvirus_like_virus_3:0.26263264,AJG39067.1|Wuchang_Cockroach_Virus_3:0.33097378)1.000000:0.09721553)0.986457:0.05764564)0.672408:0.02814518)1.000000:0.10743607)0.909102:0.06356128)0.993015:0.07636794)0.999974:0.16453992)0.999999:0.20977674,((YP_009330113.1|Hubei_myriapoda_virus_8:0.54076517,APG78769.1|Hubei_chuvirus_like_virus_4:0.86225493)1.000000:0.23495040,(YP_009333157.1|Beihai_hermit_crab_virus_3:0.75205567,AJG39083.1|Shuangao_Insect_Virus_5:0.55088795)1.000000:0.25878431)0.962163:0.11737420)1.000000:0.44106217,((YP_009336984.1|Hubei_rhabdo_like_virus_1:0.77538070,((ACZ81407.1|Moussa_virus:0.29897346,(YP_009094022.1|Fikirini_bat_rhabdovirus:0.27052671,AJR28289.1|Kwatta_virus:0.46469203)0.770594:0.17150879)1.000000:0.85753135,(BAH97108.1|Orchid_fleck_dichorhavirus:0.80422187,(NP_597914.1|Northern_cereal_mosaic_virus:0.45573305,YP_002308376.1|Lettuce_yellow_mottle_virus:0.63698490)0.999424:0.15986251)0.998486:0.14819895)0.655385:0.07453413)1.000000:0.21965598,(AOC55081.1|Berant_virus:1.02134066,((YP_009342311.1|Wenzhou_tapeworm_virus_1:0.68589219,Q8JMN0.1|Borna_disease_virus_1:1.02339960)0.999472:0.26137478,(AJZ74605.1|Zaire_ebolavirus:0.90044848,(YP_009094051.1|Sunshine_Coast_virus:0.82747932,(YP_009094217.1|Avian_avulavirus_3:0.48711345,(AGT75080.1|Human_respirovirus_1:0.20620495,AOO35462.1|Canine_distemper_virus:0.30859284)1.000000:0.29180549)0.968569:0.13406579)0.912674:0.16174149)1.000000:0.63233175)0.729677:0.06847646)0.641126:0.05131503)0.999026:0.16371398)1.000000:0.31093124,(((YP_009345119.1|Xinzhou_nematode_virus_3:0.60945737,(YP_009337866.1|Wenzhou_qinvirus_like_virus_1:0.84755777,(YP_009337849.1|Sanxia_Qinvirus_like_virus_1:0.94625300,(YP_009337852.1|Shahe_qinvirus_like_virus_1:0.92675749,(YP_009330273.1|Beihai_sesarmid_crab_virus_4:0.59255972,(YP_009337847.1|Hubei_qinvirus_like_virus_1:0.40756888,YP_009342465.1|Wuhan_insect_virus_15:0.35772132)1.000000:0.31100580)0.971230:0.09160884)0.786089:0.05916661)0.985084:0.10779844)0.890021:0.03527948)0.987278:0.17996144,(YP_009337864.1|Wenzhou_qinvirus_like_virus_2:0.73802223,APG78066.1|Hubei_qinvirus_like_virus_2:0.72635973)0.998788:0.25866540)1.000000:0.99952496,((((YP_009246481.1|Tilapia_lake_virus:2.61893565,((APG77890.1|Hubei_orthomyxo_like_virus_2:0.47906437,((AJG39094.1|Wuhan_Mosquito_Virus_6:0.51408298,AJG39088.1|Shuangao_Insect_Virus_4:0.32396647)1.000000:0.16000462,((AJG39096.1|Wuhan_Mothfly_Virus:0.29603957,APG77880.1|Hubei_earwig_virus_1:0.33719700)1.000000:0.12229618,(APG77865.1|Beihai_orthomyxo_like_virus_1:0.27842168,(AJG39085.1|Jiujie_Fly_Virus:0.44707997,YP_009110686.1|Wellfleet_Bay_virus:0.32490667)0.999585:0.11848612)1.000000:0.13353600)0.997913:0.07034533)0.992007:0.12052202)1.000000:0.49588890,((BAV18542.1|Influenza_C_virus_C_Yamagata_3_2005_:0.37882557,ADV69061.1|Influenza_A_virus_A_Denmark_105_2010_H3N2_:0.43454410)1.000000:0.33449666,(APG77896.1|Hubei_orthomyxo_like_virus_4:0.33012235,AED98371.1|Jos_virus:0.46810291)1.000000:0.38374777)0.989275:0.20984839)0.751230:0.16459053)0.419624:0.10794245,(APG77905.1|Hubei_orthomyxo_like_virus_5:1.13808679,APG77864.1|Beihai_orthomyxo_like_virus_2:0.88731926)1.000000:0.82560324)1.000000:0.75891857,(ALD89133.1|Rhizoctonia_solani_negative_stranded_virus_4:1.83541989,(((AOY18806.1|Bunyavirus_sp_:0.42953049,(AJG39275.1|Zhee_Mosquito_virus:0.28984818,AJG39271.1|Xinzhou_Mosquito_Virus:0.23852028)1.000000:0.37278637)1.000000:0.39813499,(ANC60436.1|Severe_fever_with_thrombocytopenia_virus:0.40567480,(AIE42674.1|American_dog_tick_phlebovirus:0.50166096,(YP_009010958.1|Arumowot_virus:0.11110024,YP_009346026.1|Urucuri_virus:0.15372761)1.000000:0.26368666)0.911776:0.14742595)1.000000:0.42211822)0.999974:0.39210397,(AII01810.1|South_Bay_virus:1.34560616,AKH49097.1|unidentified_Reptarenavirus:1.60321964)0.999838:0.51471963)0.999701:0.32044580)0.958071:0.24772209)0.517146:0.14881682,((APG79225.1|Beihai_hermit_crab_virus_2:1.23601157,APG79334.1|Hubei_bunya_like_virus_11:0.84667006)1.000000:1.16863834,(((APG79332.1|Hubei_myriapoda_virus_6:1.28781057,ANS56990.1|Nova_virus:0.99661909)0.999974:0.53992487,(AKN56908.1|Ferak_virus:0.62619165,AKN56871.1|Jonchet_virus:0.76409031)1.000000:1.14406227)0.419164:0.15657803,AIN55747.1|Tapirape_virus:1.29665244)0.493100:0.16728646)0.919705:0.24474160)1.000000:1.12572820)0.896059:0.25480317)0.999379:0.37740523)0.994371:0.27117360)1.000000:0.56858280)1.000000:0.52034424)0.999907:0.07826053);