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Research Article

Loss of Upc2p-Inducible ERG3 Transcription Is Sufficient To Confer Niche-Specific Azole Resistance without Compromising Candida albicans Pathogenicity

Arturo Luna-Tapia, Hubertine M. E. Willems, Josie E. Parker, Hélène Tournu, Katherine S. Barker, Andrew T. Nishimoto, P. David Rogers, Steven L. Kelly, Brian M. Peters, Glen E. Palmer
J. Andrew Alspaugh, Editor
Arturo Luna-Tapia
aDepartment of Clinical Pharmacy and Translational Science, College of Pharmacy, University of Tennessee Health Sciences Center, Memphis, Tennessee, USA
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Hubertine M. E. Willems
aDepartment of Clinical Pharmacy and Translational Science, College of Pharmacy, University of Tennessee Health Sciences Center, Memphis, Tennessee, USA
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Josie E. Parker
bInstitute of Life Science, Swansea University Medical School, Swansea, Wales, United Kingdom
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Hélène Tournu
aDepartment of Clinical Pharmacy and Translational Science, College of Pharmacy, University of Tennessee Health Sciences Center, Memphis, Tennessee, USA
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Katherine S. Barker
aDepartment of Clinical Pharmacy and Translational Science, College of Pharmacy, University of Tennessee Health Sciences Center, Memphis, Tennessee, USA
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Andrew T. Nishimoto
aDepartment of Clinical Pharmacy and Translational Science, College of Pharmacy, University of Tennessee Health Sciences Center, Memphis, Tennessee, USA
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P. David Rogers
aDepartment of Clinical Pharmacy and Translational Science, College of Pharmacy, University of Tennessee Health Sciences Center, Memphis, Tennessee, USA
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Steven L. Kelly
bInstitute of Life Science, Swansea University Medical School, Swansea, Wales, United Kingdom
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Brian M. Peters
aDepartment of Clinical Pharmacy and Translational Science, College of Pharmacy, University of Tennessee Health Sciences Center, Memphis, Tennessee, USA
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Glen E. Palmer
aDepartment of Clinical Pharmacy and Translational Science, College of Pharmacy, University of Tennessee Health Sciences Center, Memphis, Tennessee, USA
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J. Andrew Alspaugh
Duke University Medical Center
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DOI: 10.1128/mBio.00225-18
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  • FIG 1 
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    FIG 1 

    The 5′ UTR of ERG3 is an important determinant of C. albicans azole susceptibility. The C. albicans erg3Δ/Δ mutant was complemented by reintroduction of a wild-type copy of the ERG3 ORF with either 582 nucleotides (nt) (strain shprERG3) or 1,000 nt (strain lnprERG3) of the 5′ UTR and 303 nt of the 3′ UTR. The fluconazole susceptibility of the wild-type (WT), erg3Δ/Δ, shprERG3, and lnprERG3 strains and an azole-resistant clinical isolate (TW17) was evaluated using the standard CLSI broth microdilution protocol. Following 24 h (A) or 48 h (B) of incubation, growth was measured as OD600 and expressed as a percentage of the growth in the control wells with no drug (DMSO alone) for each strain. The means ± standard deviations (error bars) for three biological replicates are indicated.

  • FIG 2 
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    FIG 2 

    Azole-inducible ERG3 transcription is lost in the shprERG3 strain. Wild-type (WT), erg3Δ/Δ, shprERG3, and lnprERG3 strains were grown for 24 h in YPD at 37°C in the presence or absence of 5 µg/ml fluconazole. RNA was then extracted, ERG3 transcript abundance was quantified by qRT-PCR using the ΔCT method, and ERG3 transcript levels were normalized to that of ACT1. The mean plus standard error of the mean (error bar) for three biological replicates are shown for each strain. Each treatment group was compared using a two-way analysis of variance (ANOVA) and Tukey’s multiple-comparison test, and the P values are indicated.

  • FIG 3 
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    FIG 3 

    Loss of azole-inducible ERG3 transcription does not affect C. albicans stress tolerance or hyphal growth. (A) C. albicans cell suspensions were prepared at 1 × 107 cells/ml, and serial 1:5 dilutions prepared in sterile water. Cell suspensions were then applied to YPD agar plates or YPD agar supplemented with the indicated concentrations of fluconazole (Fluc), SDS, NaCl, or CaCl2 using a sterile multipronged applicator. The plates were incubated at 30°C for 48 h and then imaged. (B) C. albicans strains were suspended at 1 × 107 cells/ml in sterile water, and 2.5 µl spotted onto either an M199 or 10% FBS agar plate. The resulting colonies were imaged after 96-h incubation at 37°C. (C) The capacity to form biofilms was also evaluated in flat-bottomed 96-well plates. Each C. albicans strain was grown in RPMI 1640 medium at 37°C for 24 h and stained with crystal violet before biofilm mass was quantified as OD570. Values are means plus standard errors of the means (SEM) from four independent experiments. The biofilm mass of each group was compared using one-way ANOVA and Tukey’s multiple-comparison test. The value for the erg3Δ/Δ mutant group was significantly different (P < 0.0001) from the values for the WT, shprERG3, and lnprERG3 groups as indicated by the two asterisks.

  • FIG 4 
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    FIG 4 

    Azole-inducible ERG3 transcription is dependent upon the Upc2p transcription factor. The GFPγ coding sequence was cloned downstream of 1 kb of the ERG3 promoter sequence, and the resulting construct introduced into C. albicans wild-type strain CAI4 (WT) or a upc2Δ/Δ mutant. The resulting strains were grown in YNB broth in the presence or absence of 5 µg/ml fluconazole for 24 h at 35°C with shaking, before GFPγ fluorescence was quantified (excitation wavelength of 488 nm [9 nm bandpass]; emission wavelength of 507 nm [9 nm bandpass]). Fluorescence intensity was then normalized to the cell density (OD600) and expressed relative to the DMSO control. The means ± the standard deviations for four biological replicates are shown. The relative fluorescence of each treatment group was then compared using a two-way ANOVA and Tukey’s multiple-comparison test, and the P values are indicated.

  • FIG 5 
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    FIG 5 

    The shprERG3 strain is virulent but susceptible to fluconazole treatment in a mouse model of disseminated candidiasis. (A) BALB/c mice (six mice in each group) were inoculated with ~5 × 105 CFU of either the WT (GP1), erg3Δ/Δ, shprERG3, or lnprERG3 strain via lateral tail vein injection. The mice were then monitored three times daily for 14 days, and those showing distress were humanely euthanized. The survival of each group was compared using the log rank test (P = 0.0051). (B) Groups of BALB/c mice were inoculated with ~5 × 105 CFU of either WT (GP1), erg3Δ/Δ, shprERG3, or lnprERG3 strain as described above and then split into two treatment groups (four mice in each group). One group was treated with 25 mg/kg fluconazole (Fluc), and another group was treated with vehicle alone (PBS) by daily intraperitoneal injection starting 24 h after infection. Animals were monitored for 8 days, and the survival of each group was compared using the log rank test (P < 0.0001).

  • FIG 6 
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    FIG 6 

    The erg3Δ/Δ and shprERG3 C. albicans strains are resistant to fluconazole treatment in a mouse model of vaginal candidiasis. Four groups of 16 estrogen-treated female C57BL/6 mice were each inoculated intravaginally with either the WT (GP1), erg3Δ/Δ mutant, shprERG3, or lnprERG3 strain of C. albicans. Each group was then split into two treatment groups (n = 8). One group was treated with 50 mg/kg of fluconazole, and the second group was treated with vehicle alone (PBS) via intraperitoneal injection on days 4 and 7 postinfection. The levels of fungal colonization were compared 7 days (A) and 10 days (B) postinfection by quantifying CFU from vaginal lavage fluid. Polymorphonuclear leukocyte (PMN) infiltration into the vaginal mucosa was also compared from smears of lavage fluid taken on day 7 (C) or 10 (D) and stained by the Papanicolau technique. The number of PMNs were then determined by counting the number in five nonadjacent fields using a light microscope with a 40× objective. The mean ± standard error of the mean (SEM) are shown for all panels. Pairwise comparisons between treatment groups were performed using one-way ANOVA analysis with Kruskal-Wallis test.

Tables

  • Figures
  • Supplemental Material
  • TABLE 1 

    Sterol profiles of untreated C. albicans erg3Δ/Δ mutant and control strains

    SterolSterol contenta (%) (mean ± SD) in strain:
    WTerg3Δ/ΔshprERG3lnprERG3
    Squalene8.9 ± 0.63.0 ± 0.36.5 ± 0.57.7 ± 1.0
    Unknown sterolbND0.2 ± 0.0NDND
    Ergosta-8,22-dienolND8.0 ± 0.4NDND
    Ergosta-8,22,24-trienolND0.8 ± 0.0NDND
    Ergosta-5,8,22,24(28)-tetraenol1.3 ± 0.1ND0.8 ± 0.01.2 ± 0.0
    Ergosta-5,8,22-trienol0.6 ± 0.0ND0.3 ± 0.00.6 ± 0.1
    Zymosterol8.0 ± 0.2ND5.1 ± 0.45.7 ± 0.5
    Ergosterol58.4 ± 0.7ND43.1 ± 0.558.4 ± 2.8
    Ergosta-7,22-dienolND35.9 ± 0.55.8 ± 0.51.3 ± 0.4
    Ergosta-5,7,22,24-tetraenol1.8 ± 0.1ND0.9 ± 0.11.2 ± 0.1
    Ergosta-7,22,24(28)-trienolND0.5 ± 0.1NDND
    Fecosterol [E8,24(28)]4.5 ± 0.116.8 ± 1.410.4 ± 0.35.3 ± 0.3
    Ergosta-8-enolND2.7 ± 1.81.0 ± 0.00.5 ± 0.1
    14-MethylfecosterolND0.5 ± 0.1NDND
    Ergosta-5,7,24(28)-trienol1.3 ± 1.0ND1.2 ± 0.52.2 ± 0.8
    4-MethylzymosterolND0.4 ± 0.0NDND
    Ergosta-5,7-dienol4.2 ± 0.2ND2.1 ± 0.33.0 ± 0.3
    Episterol5.1 ± 0.124.1 ± 1.418.0 ± 0.38.9 ± 0.4
    Ergosta-7-enol0.2 ± 0.13.6 ± 0.30.9 ± 0.20.4 ± 0.0
    Lanosterol4.1 ± 0.32.0 ± 0.22.7 ± 0.32.7 ± 0.2
    4-MethylfecosterolND0.3 ± 0.0NDND
    4,4-Dimethylcholesta-8,24-dienol1.4 ± 0.00.5 ± 0.10.7 ± 0.00.8 ± 0.1
    Unknown sterolbND0.4 ± 0.1NDND
    Eburicol0.2 ± 0.00.3 ± 0.00.2 ± 0.00.2 ± 0.0
    Σ(“ERG3 sterols”)67.6 ± 2.10.0 ± 0.048.6 ± 1.466.6 ± 4.1
    • ↵a The content of sterols indicative of Erg3p activity is shown in boldface type. ND, not detected.

    • ↵b Sterols that have not been identified (the mass ion and/or fragmentation pattern was unclear).

  • TABLE 2 

    Sterol profiles of fluconazole-treated C. albicans erg3Δ/Δ mutant and control strains

    SterolSterol contenta (%) (mean ± SD) in strain:
    WTerg3Δ/ΔshprERG3lnprERG3
    Ergosterol2.0 ± 0.2ND0.7 ± 0.11.0 ± 0.6
    Ergosta-7,22-dienolND1.3 ± 0.10.5 ± 0.0ND
    4,14-Dimethylzymosterol11.3 ± 0.314.7 ± 1.014.3 ± 0.612.1 ± 0.8
    14-Methylfecosterol4.5 ± 0.21.7 ± 0.22.3 ± 0.12.5 ± 0.1
    4,4-Dimethyl-ergosta-8,14,24(28)-trienol1.2 ± 0.10.8 ± 0.00.7 ± 0.10.8 ± 0.0
    14-Methyl-ergosta-8,24(28)-dien-3-6-diol2.7 ± 0.5NDND1.1 ± 0.4
    Lanosterol41.6 ± 0.333.0 ± 0.633.6 ± 0.936.0 ± 0.3
    14-Methyl-ergosta-trienolb1.1 ± 0.11.0 ± 0.11.0 ± 0.00.9 ± 0.1
    Eburicol35.5 ± 0.747.6 ± 1.747.0 ± 1.745.6 ± 0.8
    Σ(“ERG3 sterols”)4.7 ± 0.70.0 ± 0.00.7 ± 0.12.2 ± 0.9
    • ↵a The content of sterols indicative of Erg3p activity is shown in boldface text. ND, not detected.

    • ↵b In some cases (e.g., 14-methyl-ergosta-trienol), we cannot be certain of the arrangement of double bonds in the sterol, but it is an ergosta type sterol with three double bonds and a 14-methyl group.

  • TABLE 3 

    Summary of pathogenicity and azole susceptibility results in the mouse models of vaginal and disseminated candidiasis

    StrainSummary of resultsa
    Vaginal infectionDisseminated infection
    PathogenicityAzole resistancePathogenicityAzole resistance
    WT************
    erg3Δ/Δ***************
    shprERG3****************
    lnprERG3*************
    • ↵a Each phenotype is scored on a scale of 1 to 5 with * indicating little or no pathogenicity/azole resistance and ***** indicating full pathogenicity/azole resistance.

Supplemental Material

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  • FIG S1 

    C. albicans erg3Δ/Δ and shprERG3 strains are resistant to several azole antifungals. The susceptibility of wild-type (WT) (GP1), erg3Δ/Δ, shprERG3, lnprERG3, and an azole-resistant clinical isolate (TW17) to the triazole drugs voriconazole (A) and itraconazole (B) and the imidazole ketoconazole (C) were evaluated using the standard CLSI broth microdilution protocol. Following 48-h incubation, growth was measured as OD600 and expressed as a percentage of the growth in the no-drug control wells (DMSO alone) for each strain. Values are means ± standard deviations for three biological replicates. Download FIG S1, JPG file, 1.8 MB.

    Copyright © 2018 Luna-Tapia et al.

    This content is distributed under the terms of the Creative Commons Attribution 4.0 International license.

  • FIG S2 

    C. albicans erg3Δ/Δ mutant forms hyphae in liquid M199 medium. Wild-type (WT), erg3Δ/Δ, shprERG3, and lnprERG3 strains of C. albicans were subcultured into M199 medium at approximately 1 × 106 cells/ml and incubated at 37°C with shaking. Samples were taken at 4-h intervals and fixed with formalin. Cell morphologies were observed under light microscopy using a 40× objective. Bar = 50 µM. Download FIG S2, JPG file, 1.4 MB.

    Copyright © 2018 Luna-Tapia et al.

    This content is distributed under the terms of the Creative Commons Attribution 4.0 International license.

  • FIG S3 

    Overexpression of UME6 causes constitutive hyphal growth in the C. albicans erg3Δ/Δ mutant. The WT CAI4 strain and the erg3Δ/Δ mutant were transformed with pKE4-UME6 to overexpress the Ume6p transcription factor or with pKE4 vector alone. The resulting strains were grown in YPD broth overnight at 30°C and observed by light microscopy using a 40× objective. Bar = 100 µM. Download FIG S3, JPG file, 1.8 MB.

    Copyright © 2018 Luna-Tapia et al.

    This content is distributed under the terms of the Creative Commons Attribution 4.0 International license.

  • FIG S4 

    Truncation of the 5′ UTR of ERG3 results in loss of azole-inducible transcription. Reporter constructs consisting of 1,000 bp (PlnERG3) or 582 bp (PshERG3) of the ERG3 5′ UTR from strain SC5314 placed upstream of the GFPγ coding sequence were introduced into C. albicans strain CAI4 (WT). The resulting strains were grown in YNB medium with or without 5 µg/ml fluconazole for 24 h at 35°C with shaking. GFPγ fluorescence intensity was quantified (excitation wavelength of 488 nm; emission wavelength of 507 nm), normalized for cell density (OD600), and expressed relative to that of the DMSO control of the PlnERG3 reporter. Values are means ± standard deviations for four biological replicates. The groups were compared by using a two-way ANOVA and Tukey’s multiple-comparison test. Download FIG S4, JPG file, 0.5 MB.

    Copyright © 2018 Luna-Tapia et al.

    This content is distributed under the terms of the Creative Commons Attribution 4.0 International license.

  • FIG S5 

    Multiple regulatory elements are located within 1 kb of the C. albicans ERG3 5′ UTR. Motifs that represent putative Upc2p-binding sites (orange bars) were identified using the program matrix-scan at the Regulatory Sequence Analysis Tool RSAT-Fungi webserver (http://rsat-tagc.univ-mrs.fr/rsat/matrix-scan_form.cgi). The scan was performed using the JASPAR core fungi collections 2018 and the matrix identifier UPC2 - MA0411.1 in transfac format. A Markov order 1 and C. albicans genome were used for the background model estimation method. Scanning was performed on both strands, with a cis-regulatory element-enriched region (CRER) size of 0 to 500 bp, and the default upper detection threshold P value (0.001). Putative TATA boxes (light blue bars) were identified using the DNA-pattern tool at the RSAT-fungi server and the TATA box consensus sequence TATAWAWR (W is A/T; R is A/G) as the query. Segments of the ERG3 5′ UTR that correspond to the “short” (582-bp) and “long” (1-kb) promoter variants are indicated in gray or dark blue lines, respectively. DRE, direct repeat element (unknown function). Download FIG S5, JPG file, 1.6 MB.

    Copyright © 2018 Luna-Tapia et al.

    This content is distributed under the terms of the Creative Commons Attribution 4.0 International license.

  • FIG S6 

    The C. albicans erg3Δ/Δ mutant shows defects in hyphal formation during disseminated infection. Kidney homogenates from animals infected by tail vein injection with the wild-type (WT), erg3Δ/Δ, shprERG3, or lnprERG3 strain of C. albicans were treated with 20% KOH, and visualized by light microscopy using a 40× objective. Bar = 50 µM. Download FIG S6, JPG file, 2 MB.

    Copyright © 2018 Luna-Tapia et al.

    This content is distributed under the terms of the Creative Commons Attribution 4.0 International license.

  • FIG S7 

    The C. albicans erg3Δ/Δ mutant forms hyphae in the vaginal mucosa. Vaginal lavages were performed on mice 10 days after inoculation with wild-type (WT), erg3Δ/Δ, shprERG3, and lnprERG3 strains of C. albicans. Following treatment with 20% KOH, each strain was observed by light microscopy using a 40× objective. Download FIG S7, JPG file, 2.2 MB.

    Copyright © 2018 Luna-Tapia et al.

    This content is distributed under the terms of the Creative Commons Attribution 4.0 International license.

  • TABLE S1 

    Oligonucleotides used in this study. Download TABLE S1, DOCX file, 0.03 MB.

    Copyright © 2018 Luna-Tapia et al.

    This content is distributed under the terms of the Creative Commons Attribution 4.0 International license.

  • TABLE S2 

    Strains used in this study. Download TABLE S2, DOCX file, 0.03 MB.

    Copyright © 2018 Luna-Tapia et al.

    This content is distributed under the terms of the Creative Commons Attribution 4.0 International license.

  • FIG S8 

    C. albicans erg3 clinical isolates are phenotypically similar to the shprERG3 strain. The fluconazole susceptibility of the C. albicans SC5314 (wild type), our erg3Δ/Δ mutant, the azole-resistant isolate TW17, the previously reported erg3 clinical isolates CA12 and CA1008, and the so-called erg3 “leaky” strains CA488 and CA490 was evaluated using the standard CLSI broth microdilution protocol. (A) Following 24-h incubation, growth was measured as OD600 and expressed as a percentage of the growth in the no-drug (DMSO alone) control wells of each strain. The means ± standard deviations for three biological replicates are shown. The phenotypes of C. albicans SC5314, CA12, CA1008, CA488, and CA490 were tested under different stresses. (B) Each C. albicans strain was suspended at 1 × 107 cells/ml, serial 1:5 dilutions were prepared in sterile water and applied to agar plates containing fluconazole, SDS, NaCl, or CaCl2, using a sterile multipronged applicator. The plates were incubated at 30°C for 48 h and then imaged. (C) Each C. albicans strain was suspended in a solution at 1 × 107 cells/ml, and 2.5 µl was spotted on 10% FBS or M199 agar plates. After incubation at 37°C for 96 h, the resulting colonies were imaged. Download FIG S8, JPG file, 2.8 MB.

    Copyright © 2018 Luna-Tapia et al.

    This content is distributed under the terms of the Creative Commons Attribution 4.0 International license.

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Loss of Upc2p-Inducible ERG3 Transcription Is Sufficient To Confer Niche-Specific Azole Resistance without Compromising Candida albicans Pathogenicity
Arturo Luna-Tapia, Hubertine M. E. Willems, Josie E. Parker, Hélène Tournu, Katherine S. Barker, Andrew T. Nishimoto, P. David Rogers, Steven L. Kelly, Brian M. Peters, Glen E. Palmer
mBio May 2018, 9 (3) e00225-18; DOI: 10.1128/mBio.00225-18

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Loss of Upc2p-Inducible ERG3 Transcription Is Sufficient To Confer Niche-Specific Azole Resistance without Compromising Candida albicans Pathogenicity
Arturo Luna-Tapia, Hubertine M. E. Willems, Josie E. Parker, Hélène Tournu, Katherine S. Barker, Andrew T. Nishimoto, P. David Rogers, Steven L. Kelly, Brian M. Peters, Glen E. Palmer
mBio May 2018, 9 (3) e00225-18; DOI: 10.1128/mBio.00225-18
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KEYWORDS

azole resistance
Candida albicans
disseminated candidiasis
ERG3
mouse models
pathogenesis
vaginal candidiasis

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