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Research Article

Microbial Community Structure and Arsenic Biogeochemistry in Two Arsenic-Impacted Aquifers in Bangladesh

Edwin T. Gnanaprakasam, Jonathan R. Lloyd, Christopher Boothman, Kazi Matin Ahmed, Imtiaz Choudhury, Benjamin C. Bostick, Alexander van Geen, Brian J. Mailloux
Andreas Kappler, Invited Editor, Dianne K. Newman, Editor
Edwin T. Gnanaprakasam
b School of Earth and Environmental Sciences and Williamson Research Centre for Molecular Environmental Science, the University of Manchester, Manchester, United Kingdom
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Jonathan R. Lloyd
b School of Earth and Environmental Sciences and Williamson Research Centre for Molecular Environmental Science, the University of Manchester, Manchester, United Kingdom
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Christopher Boothman
b School of Earth and Environmental Sciences and Williamson Research Centre for Molecular Environmental Science, the University of Manchester, Manchester, United Kingdom
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Kazi Matin Ahmed
c Department of Geology, University of Dhaka, Dhaka, Bangladesh
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Imtiaz Choudhury
c Department of Geology, University of Dhaka, Dhaka, Bangladesh
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Benjamin C. Bostick
d Lamont-Doherty Earth Observatory, Columbia University, Palisades, New York, USA
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Alexander van Geen
d Lamont-Doherty Earth Observatory, Columbia University, Palisades, New York, USA
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Brian J. Mailloux
a Environmental Science Department, Barnard College, New York, New York, USA
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Andreas Kappler
University of Tuebingen
Roles: Invited Editor
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Dianne K. Newman
California Institute of Technology
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DOI: 10.1128/mBio.01326-17
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  • FIG 1 
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    FIG 1 

    Chemical and microbial ecology analysis of sediments and water from the site F aquifer. (A) Sediment (Sed) arsenic and iron concentration and reflectance curve (blue, red, and green) along the sediment depths with the presence of dissimilatory arsenic-respiring bacteria (brown) and iron-reducing members of the Geobacteraceae (lines). (B) As(V), As(III), and AS2S3 species in the sediment (XANES) at site F. (C) Arsenic X-ray absorption near the edge structure (XANES) spectra along various depths of sediments. (D) Fraction of the Fe phases in relation to the Fe minerals along various depths. (E) As, Fe concentration (blue and green) in wells (aqueous phase), and groundwater tritium age (red). (F) 16S rRNA gene analysis for the microbial communities. Bar diagrams indicate the percentage of each class of the bacterial kingdom.

  • FIG 2 
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    FIG 2 

    Chemical and microbial ecology analysis of sediments and water from the site B aquifers. (A) Sediment (Sed) arsenic and iron concentration and reflectance curve (blue, red, and green) along the sediment depths with the presence of dissimilatory arsenic-reducing bacteria (brown) and iron-reducing members of the Geobacteraceae (lines). (B) As(V), As(III), and AS2S3 species in the sediment (XANES) at site B. (C) Arsenic X-ray absorption near the edge structure (XANES) spectra along various depths of sediments. (D) Fraction of Fe phases in relation to the Fe minerals along various depths. (E) As, Fe concentration (blue and green) in wells (aqueous phase), and groundwater tritium age (red). (F) 16S rRNA gene analysis for the microbial communities. The bar diagram indicates the percentage of each class of the bacterial kingdom.

  • FIG 3 
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    FIG 3 

    Top Spearman rank correlation (P = 0.01) plots relating microbial communities to mineral species. (A, D, and G) As(III) correlation with the microbial communities at site B, site F, and at combined sites. (B, E, and H) Fe(III) correlation with the microbial communities at site B, site F, and at combined sites. (C, F, and I) Aqueous As correlation with the microbial communities.

Supplemental Material

  • Figures
  • TABLE S1 

    Chemical and molecular ecology analysis of sediments and water from the site F aquifer. Download TABLE S1, DOCX file, 0.1 MB.

    Copyright © 2017 Gnanaprakasam et al.

    This content is distributed under the terms of the Creative Commons Attribution 4.0 International license .

  • TABLE S2 

    Chemical and molecular ecology analysis of sediments and water from the site B aquifer. Download TABLE S2, DOCX file, 0.1 MB.

    Copyright © 2017 Gnanaprakasam et al.

    This content is distributed under the terms of the Creative Commons Attribution 4.0 International license .

  • FIG S1 

    PCR confirmation of functional genes. The positive control (+ve) for the arrA gene is Shewanella sp. strain ANA-3, whereas the positive control for Geobacteraceae specific 16S rRNA gene and dsr gene is Geobacter sulfurreducens. The sizes of the amplified products are 625 and 1,900 bp, respectively. Download FIG S1, TIF file, 1.3 MB.

    Copyright © 2017 Gnanaprakasam et al.

    This content is distributed under the terms of the Creative Commons Attribution 4.0 International license .

  • TABLE S3 

    Correlations between mineralogy and the molecular data. Download TABLE S3, DOCX file, 0.1 MB.

    Copyright © 2017 Gnanaprakasam et al.

    This content is distributed under the terms of the Creative Commons Attribution 4.0 International license .

  • FIG S2 

    Top 9 correlation of bacteria with Fe and As at site F. Download FIG S2, TIF file, 2.3 MB.

    Copyright © 2017 Gnanaprakasam et al.

    This content is distributed under the terms of the Creative Commons Attribution 4.0 International license .

  • FIG S3 

    Top 9 correlation of bacteria with arsenic at site F. Download FIG S3, TIF file, 1.2 MB.

    Copyright © 2017 Gnanaprakasam et al.

    This content is distributed under the terms of the Creative Commons Attribution 4.0 International license .

  • FIG S4 

    Top 9 correlation of bacteria with Fe and As at site B. Download FIG S4, TIF file, 1.4 MB.

    Copyright © 2017 Gnanaprakasam et al.

    This content is distributed under the terms of the Creative Commons Attribution 4.0 International license .

  • FIG S5 

    Top 9 correlation of bacteria with arsenic at site B. Download FIG S5, TIF file, 1.1 MB.

    Copyright © 2017 Gnanaprakasam et al.

    This content is distributed under the terms of the Creative Commons Attribution 4.0 International license .

  • FIG S6 

    Top 9 correlation of bacteria with Fe and As at sites F and B. Download FIG S6, TIF file, 1.3 MB.

    Copyright © 2017 Gnanaprakasam et al.

    This content is distributed under the terms of the Creative Commons Attribution 4.0 International license .

  • FIG S7 

    Top 9 correlation of bacteria with arsenic at sites F and B. Download FIG S7, TIF file, 1.2 MB.

    Copyright © 2017 Gnanaprakasam et al.

    This content is distributed under the terms of the Creative Commons Attribution 4.0 International license .

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Microbial Community Structure and Arsenic Biogeochemistry in Two Arsenic-Impacted Aquifers in Bangladesh
Edwin T. Gnanaprakasam, Jonathan R. Lloyd, Christopher Boothman, Kazi Matin Ahmed, Imtiaz Choudhury, Benjamin C. Bostick, Alexander van Geen, Brian J. Mailloux
mBio Nov 2017, 8 (6) e01326-17; DOI: 10.1128/mBio.01326-17

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Microbial Community Structure and Arsenic Biogeochemistry in Two Arsenic-Impacted Aquifers in Bangladesh
Edwin T. Gnanaprakasam, Jonathan R. Lloyd, Christopher Boothman, Kazi Matin Ahmed, Imtiaz Choudhury, Benjamin C. Bostick, Alexander van Geen, Brian J. Mailloux
mBio Nov 2017, 8 (6) e01326-17; DOI: 10.1128/mBio.01326-17
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KEYWORDS

arsenic
bacteria
Biota
Groundwater
arsenic
biogeochemistry
geomicrobiology
metagenomics

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