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Research Article

Corynebacterium accolens Releases Antipneumococcal Free Fatty Acids from Human Nostril and Skin Surface Triacylglycerols

Lindsey Bomar, Silvio D. Brugger, Brian H. Yost, Sean S. Davies, Katherine P. Lemon
Gary B. Huffnagle, Editor
Lindsey Bomar
aDepartment of Microbiology, The Forsyth Institute, Cambridge, Massachusetts, USA
bDepartment of Oral Medicine, Infection and Immunity, Harvard School of Dental Medicine, Boston, Massachusetts, USA
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Silvio D. Brugger
aDepartment of Microbiology, The Forsyth Institute, Cambridge, Massachusetts, USA
bDepartment of Oral Medicine, Infection and Immunity, Harvard School of Dental Medicine, Boston, Massachusetts, USA
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Brian H. Yost
aDepartment of Microbiology, The Forsyth Institute, Cambridge, Massachusetts, USA
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Sean S. Davies
cDepartment of Pharmacology, Division of Clinical Pharmacology, Vanderbilt University, Nashville, Tennessee, USA
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Katherine P. Lemon
aDepartment of Microbiology, The Forsyth Institute, Cambridge, Massachusetts, USA
dDivision of Infectious Diseases, Boston Children’s Hospital, Harvard Medical School, Boston, Massachusetts, USA
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Gary B. Huffnagle
University of Michigan Medical School
Roles: Editor
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DOI: 10.1128/mBio.01725-15
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  • FIG 1 
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    FIG 1 

    Nasopharyngeal Corynebacterium spp. are overrepresented in children without S. pneumoniae nasal colonization. Shown is a linear discriminant analysis (LDA) plot of the nasopharyngeal bacterial genera overrepresented when S. pneumoniae was absent (dark gray) or present (light gray) by cultivation. Abbreviations indicate the following genera: Str, Streptococcus; Dol, Dolosigranulum; Cor, Corynebacterium. Data were obtained from 27 nasopharyngeal swabs collected from healthy children aged 6 months to 7 years. Swabs used to inoculate medium for S. pneumoniae cultivation were frozen and later used to harvest nucleic acids, which were analyzed by 16S rRNA V1-3 tag pyrosequencing. Sequences were analyzed as described in Materials and Methods.

  • FIG 2 
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    FIG 2 

    Model human skin surface TAGs triolein (triO) and trilinolein (triL) support the growth of the fatty acid-requiring species C. accolens. Black arrows indicate the oleic acid esters in (A) triolein and the linoleic esters in (B) trilinolein. (C) The mean turbidity (OD600) after 48 h of shaken aerobic growth at 37°C demonstrated increased C. accolens growth in BHI broth supplemented with one of the TAGs compared to solvent-only controls (n = 9). Data were analyzed using an ANOVA and Tukey’s multiple-comparisons test. Error bars represent standard errors of the means. ****, P ≤ 0.0001.

  • FIG 3 
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    FIG 3 

    C. accolens inhibits S. pneumoniae. C. accolens KPL1818 (Cac) inhibited S. pneumoniae 603 (Spn) growth on BHIC agar spread with 50 µl of a 100-mg/ml solution of (A) triolein solubilized in chloroform (triO + CHCl3) or (C) trilinolein emulsified in ethanol (triL + EtOH), but not on medium spread with 50 µl of solvent alone: (B) chloroform (CHCl3) or (D) EtOH. Representative images are shown (n = 3). To permit visualization of partial inhibition of the pneumococcal spot, S. pneumoniae was inoculated at various distances from C. accolens, as shown by the varied sizes of ZOIs, which are likely due to differences in diffusion of the antipneumococcal molecule(s).

  • FIG 4 
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    FIG 4 

    Oleic acid is enriched in methanolic extracts of C. accolens CFCM. We used mass spectrometric analysis to identify compounds uniquely enriched in C. accolens CFCM. Methanolic extracts were analyzed by direct line infusion into a triple-quadrupole mass spectrometer operating in negative-ion scanning mode from m/z 50 to m/z 500. (A) To identify novel compounds present in the CFCM, the limited mass spectrum of the methanolic extract from unconditioned medium was subtracted from the spectrum for C. accolens CFCM. (B) Limited mass scanning of the novel m/z 281 peak present in CFCM, determined via high-resolution mass spectrometry, which gave a measured mass of m/z 281.2485, consistent with the calculated mass of oleic acid (m/z 281.2486). (C) An FFA standard mixture containing authentic oleic acid and heptadecanoic acid (HdA), as an internal standard, was analyzed by reversed-phase ultraperformance liquid chromatography coupled to tandem mass spectrometry, operating in multiple reaction mode monitoring transition of m/z 281 to m/z 281 at 10 eV for HdA and m/z 269 to m/z 269 at 10 eV for oleic acid, respectively. (D) CFCM with HdA added as an internal standard, analyzed under the same chromatographic conditions. (E) Unconditioned medium with HdA added as an internal standard, analyzed under the same chromatographic conditions. Representative spectra (A and B) or chromatographs (C, D, and E) are shown.

  • FIG 5 
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    FIG 5 

    C. accolens LipS1 is necessary for growth on triolein (triO) as the sole source of fatty acids. (A) A C. accolens mutant strain (LipS1−) harboring an in-frame deletion in lipS1 did not grow in BHI supplemented with triolein (0.1 mg/ml), whereas the wild-type (WT) did. Growth was measured as the mean OD600 following 48 h of aerobic growth with shaking at 37°C. Data were analyzed using a Welch two-sample t test. n = 3. Error bars represent standard deviations. *, P ≤ 0.05. (B) The lipase-deficient mutant carrying the empty vector (LipS1− pCGL+) did not grow in BHI supplemented with triolein; however, the complemented mutant (LipS1− cLipS1+) did. For comparison, the empty vector and complemented vector controls for the parental strain (WT pCGL+ and WT cLipS1+, respectively) are included. Data (n = 3) were analyzed using an ANOVA and Tukey’s multiple-comparisons test. Error bars represent standard deviations. **, P ≤ 0.01; ****, P ≤ 0.0001.

  • FIG 6 
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    FIG 6 

    One model is that C. accolens modifies the nasal and/or skin habitat, making it inhospitable for S. pneumoniae. C. accolens produces a lipase, likely extracellular, that releases FFAs from host TAGs. Some of these FFAs have antibacterial activity and might impede the colonization and proliferation of S. pneumoniae and possibly other FFA-susceptible colonizers.

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  • TABLE 1 

    Methanol extracts of C. accolens KPL1818 CFCM inhibit S. pneumoniae 603 and contain free oleic acid

    Methanol extract source
    (growth medium)
    ZOI (mm)aFree oleic acid
    concn (µM)b
    C. accolens CFCM
    (LB agarose triolein)
    11.7 ± 3.81,099.40 ± 422.98
    Sterile medium
    (LB agarose triolein)
    0.00 ± 0.006.07 ± 12.15
    • ↵a The mean ZOI ± SD produced in a disk-diffusion assay versus S. pneumoniae 603. The ZOI includes the disk diameter (6 mm). Extracts from each biological replicate (n = 4) were assayed in three technical replicates and results were then averaged.

    • ↵b The mean ± SD concentration of oleic acid found in methanol extracts. For samples in which no free oleic acid was detected, a value of 0 was used for calculating the mean and SD and for statistical analysis.

  • TABLE 2 

    Antipneumococcal activity of FFAs reported on human skin or in human nasal fluid

    Test FFAaFFA descriptionZOIb (mm) for S. pneumoniae strain (serotype)
    603 (6B)TIGR4 (4)DBL5 (5)WU2 (3)DSM 24048 (19F)DSM 11868 (23F)
    Oleic18:1 cis-933.0 ± 3.024.0 ± 3.624.3 ± 4.035.7 ± 3.820.3 ± 4.030.0 ± 4.4
    Linoleic18:2 cis-9,1230.3 ± 1.528.7 ± 3.525.0 ± 3.030.0 ± 6.620.3 ± 3.226.0 ± 6.1
    Stearic18:0NDNDNDNDNDND
    Sapienic16:1 cis-629.3 ± 5.828.7 ± 4.224.7 ± 3.533.7 ± 5.725.3 ± 6.728.7 ± 5.7
    Palmitoleic16:1 cis-919.0 ± 1.720.3 ± 2.919.0 ± 3.024.3 ± 0.617.7 ± 0.618.0 ± 3.6
    Palmitic16:0NDNDNDNDNDND
    Myristic14:011.3 ± 0.610.0 ± 0.010.0 ± 0.09.7 ± 0.610.0 ± 0.010.3 ± 0.6
    Lauric12:020.7 ± 0.614.3 ± 6.78.3 ± 0.615.3 ± 1.211.3 ± 1.516.0 ± 2.6
    EthanolNegative controlNDNDNDNDNDND
    • ↵a One hundred micrograms of each FFA in 10 µl of 200-proof ethanol was pipetted onto a 6-mm filter disk that was placed on a lawn of S. pneumoniae.

    • ↵b The diameter of the ZOI (mean ± standard deviation; n = 3) was measured after overnight incubation at 37°C with 5% CO2. ND, ZOI not detected.

Supplemental Material

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  • Figure S1 

    Basic anatomy of the human nasal passages. Pneumococcus colonizes the nose from the nostrils to the nasopharynx. The nostrils (indicated by the arrow), also known as the anterior nares, are the entrance to the nasal passages and open onto the skin-covered surface of the nasal vestibules. The skin lining the nasal vestibules includes sweat and sebaceous glands. Posterior to the nasal vestibules, the epithelial surface of the nasal cavity transitions to a mucosal surface. Respiratory epithelium, including cilia, lines the posterior segment of the nasal cavity and the nasopharynx, at the top of the back of the throat. Download Figure S1, PDF file, 0.02 MB.

    Copyright © 2016 Bomar et al.

    This is an open-access article distributed under the terms of the Creative Commons Attribution-Noncommercial-ShareAlike 3.0 Unported license, which permits unrestricted noncommercial use, distribution, and reproduction in any medium, provided the original author and source are credited.

  • Figure S2 

    Relative abundance plots for each of the three bacterial genera that are overrepresented when S. pneumoniae is absent (class 0) or present (class 1) via cultivation. Subclasses are shown as follows: A, in red, <2 years old; B, in green, 2 to <7 years. (A) Streptococcus; (B) Dolosigranulum; (C) Corynebacterium. Plots were generated using LEfSE from the same data used to generate Fig. 1. The solid and dashed lines indicate the mean and the median relative abundance levels, respectively. Each bar represents a nasopharyngeal (NP) sample from one volunteer. Download Figure S2, PDF file, 1.5 MB.

    Copyright © 2016 Bomar et al.

    This is an open-access article distributed under the terms of the Creative Commons Attribution-Noncommercial-ShareAlike 3.0 Unported license, which permits unrestricted noncommercial use, distribution, and reproduction in any medium, provided the original author and source are credited.

  • Figure S3 

    Dendrogram representing phylogenetic relationship of KPL1818 with C. accolens and other Corynebacterium spp. The dendrogram was constructed using the maximum-likelihood method with 1,000 bootstrap replications of ClustalW-aligned partial rpoB sequences (446-bp fragment between primers C2700F and C3130R) (Khamis A, Raoult D, La Scola B, J Clin Microbiol 42:3925–3931, doi:10.1128/JCM.42.9.3925-3931.2004). Branch support is indicated by the value at each node. D. cinnamea was used as an outgroup. Download Figure S3, PDF file, 0.03 MB.

    Copyright © 2016 Bomar et al.

    This is an open-access article distributed under the terms of the Creative Commons Attribution-Noncommercial-ShareAlike 3.0 Unported license, which permits unrestricted noncommercial use, distribution, and reproduction in any medium, provided the original author and source are credited.

  • Table S1 

    Additional C. accolens strains tested for inhibition of S. pneumoniae 603. Table S1, PDF file, 0.04 MB.

    Copyright © 2016 Bomar et al.

    This is an open-access article distributed under the terms of the Creative Commons Attribution-Noncommercial-ShareAlike 3.0 Unported license, which permits unrestricted noncommercial use, distribution, and reproduction in any medium, provided the original author and source are credited.

  • Figure S4 

    C. accolens lipS1 is not necessary for growth when Tween 80 (Tw80) is the sole source of fatty acids. (A) A C. accolens mutant (LipS1-) harboring an in-frame deletion in lipS1 grew comparably to wild type (WT) in BHI supplemented with 1% Tw80. Growth in A and B was measured as the mean OD600 following 48 h of aerobic growth shaking at 37°C. Data were analyzed using a Welch two-sample t test, n = 3, and error bars represent SD. (B) The lipase-deficient mutant carrying the empty vector (LipS1- pCGL+) also grew comparably to wild type (WT) in BHI supplemented with 1% Tw80 as did the complemented mutant (LipS1- cLipS1+). For comparison, the empty vector and complemented vector controls for the parental strain (WT pCGL+ and WT cLipS1+, respectively) are included. Data (n = 3) were analyzed using ANOVA. Error bars represent SD. Download Figure S4, PDF file, 0.02 MB.

    Copyright © 2016 Bomar et al.

    This is an open-access article distributed under the terms of the Creative Commons Attribution-Noncommercial-ShareAlike 3.0 Unported license, which permits unrestricted noncommercial use, distribution, and reproduction in any medium, provided the original author and source are credited.

  • Figure S5 

    LipS1 from C. accolens KPL1818. Shown at the top are the predicted open reading frame and corresponding translation for the His6-tagged LipS1 (WP_034657805.1), as annotated in NCBI. The predicted signal sequence (orange bar), canonical G-X-S-X-G motif (red bar), His6 tag (gray bar), and stop codon (blue bar) are highlighted. The sequence cloned into pLB502 contains an additional 949 bp 5′ of the predicted start codon shown. Download Figure S5, PDF file, 1.4 MB.

    Copyright © 2016 Bomar et al.

    This is an open-access article distributed under the terms of the Creative Commons Attribution-Noncommercial-ShareAlike 3.0 Unported license, which permits unrestricted noncommercial use, distribution, and reproduction in any medium, provided the original author and source are credited.

  • Text S1 

    Supplemental Materials and Methods. Download Text S1, PDF file, 0.1 MB.

    Copyright © 2016 Bomar et al.

    This is an open-access article distributed under the terms of the Creative Commons Attribution-Noncommercial-ShareAlike 3.0 Unported license, which permits unrestricted noncommercial use, distribution, and reproduction in any medium, provided the original author and source are credited.

  • Table S2 

    Bacterial strains and plasmids used in this study Table S2, PDF file, 0.1 MB.

    Copyright © 2016 Bomar et al.

    This is an open-access article distributed under the terms of the Creative Commons Attribution-Noncommercial-ShareAlike 3.0 Unported license, which permits unrestricted noncommercial use, distribution, and reproduction in any medium, provided the original author and source are credited.

  • Table S3 

    Primers designed for this study Table S3, PDF file, 0.05 MB.

    Copyright © 2016 Bomar et al.

    This is an open-access article distributed under the terms of the Creative Commons Attribution-Noncommercial-ShareAlike 3.0 Unported license, which permits unrestricted noncommercial use, distribution, and reproduction in any medium, provided the original author and source are credited.

Additional Files

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  • Supplemental Material
  • Supplementary Data

    Supplementary Data

    • Text s1, PDF - Text s1, PDF
    • Figure sf1, PDF - Figure sf1, PDF
    • Figure sf2, PDF - Figure sf2, PDF
    • Figure sf3, PDF - Figure sf3, PDF
    • Figure sf4, PDF - Figure sf4, PDF
    • Figure sf5, PDF - Figure sf5, PDF
    • Table st1, PDF - Table st1, PDF
    • Table st2, PDF - Table st2, PDF
    • Table st3, PDF - Table st3, PDF
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Corynebacterium accolens Releases Antipneumococcal Free Fatty Acids from Human Nostril and Skin Surface Triacylglycerols
Lindsey Bomar, Silvio D. Brugger, Brian H. Yost, Sean S. Davies, Katherine P. Lemon
mBio Jan 2016, 7 (1) e01725-15; DOI: 10.1128/mBio.01725-15

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Corynebacterium accolens Releases Antipneumococcal Free Fatty Acids from Human Nostril and Skin Surface Triacylglycerols
Lindsey Bomar, Silvio D. Brugger, Brian H. Yost, Sean S. Davies, Katherine P. Lemon
mBio Jan 2016, 7 (1) e01725-15; DOI: 10.1128/mBio.01725-15
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