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Research Article | Molecular Biology and Physiology

Massively Parallel Fitness Profiling Reveals Multiple Novel Enzymes in Pseudomonas putida Lysine Metabolism

Mitchell G. Thompson, Jacquelyn M. Blake-Hedges, Pablo Cruz-Morales, Jesus F. Barajas, Samuel C. Curran, Christopher B. Eiben, Nicholas C. Harris, Veronica T. Benites, Jennifer W. Gin, William A. Sharpless, Frederick F. Twigg, Will Skyrud, Rohith N. Krishna, Jose Henrique Pereira, Edward E. K. Baidoo, Christopher J. Petzold, Paul D. Adams, Adam P. Arkin, Adam M. Deutschbauer, Jay D. Keasling
Sang Yup Lee, Editor
Mitchell G. Thompson
aJoint BioEnergy Institute, Emeryville, California, USA
bBiological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
cDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA
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Jacquelyn M. Blake-Hedges
aJoint BioEnergy Institute, Emeryville, California, USA
bBiological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
dDepartment of Chemistry, University of California, Berkeley, Berkeley, California, USA
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Pablo Cruz-Morales
aJoint BioEnergy Institute, Emeryville, California, USA
bBiological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
eCentro de Biotecnología FEMSA, Tecnológico de Monterrey, Monterrey, NL, Mexico
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Jesus F. Barajas
bBiological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
fDepartment of Energy Agile BioFoundry, Emeryville, California, USA
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Samuel C. Curran
aJoint BioEnergy Institute, Emeryville, California, USA
bBiological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
gComparative Biochemistry Graduate Group, University of California, Berkeley, Berkeley, California, USA
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Christopher B. Eiben
aJoint BioEnergy Institute, Emeryville, California, USA
bBiological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
jJoint Program in Bioengineering, University of California, Berkeley, Berkeley, California, USA
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Nicholas C. Harris
cDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA
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Veronica T. Benites
aJoint BioEnergy Institute, Emeryville, California, USA
bBiological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
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Jennifer W. Gin
aJoint BioEnergy Institute, Emeryville, California, USA
bBiological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
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William A. Sharpless
aJoint BioEnergy Institute, Emeryville, California, USA
bBiological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
cDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA
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Frederick F. Twigg
hDepartment of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California, USA
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Will Skyrud
dDepartment of Chemistry, University of California, Berkeley, Berkeley, California, USA
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Rohith N. Krishna
aJoint BioEnergy Institute, Emeryville, California, USA
bBiological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
dDepartment of Chemistry, University of California, Berkeley, Berkeley, California, USA
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Jose Henrique Pereira
aJoint BioEnergy Institute, Emeryville, California, USA
iMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
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Edward E. K. Baidoo
aJoint BioEnergy Institute, Emeryville, California, USA
bBiological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
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Christopher J. Petzold
aJoint BioEnergy Institute, Emeryville, California, USA
bBiological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
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Paul D. Adams
aJoint BioEnergy Institute, Emeryville, California, USA
iMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
jJoint Program in Bioengineering, University of California, Berkeley, Berkeley, California, USA
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Adam P. Arkin
jJoint Program in Bioengineering, University of California, Berkeley, Berkeley, California, USA
kEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
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Adam M. Deutschbauer
cDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA
kEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
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Jay D. Keasling
aJoint BioEnergy Institute, Emeryville, California, USA
bBiological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
hDepartment of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California, USA
jJoint Program in Bioengineering, University of California, Berkeley, Berkeley, California, USA
lThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kongens Lyngby, Denmark
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Sang Yup Lee
Korea Advanced Institute of Science and Technology
Roles: Editor
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DOI: 10.1128/mBio.02577-18
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Article Information

DOI 
https://doi.org/10.1128/mBio.02577-18
PubMed 
31064836

Published By 
American Society for Microbiology
History 
  • Received March 19, 2019
  • Accepted March 25, 2019
  • Published online May 7, 2019.

Copyright & Usage 
This is a work of the U.S. Government and is not subject to copyright protection in the United States. Foreign copyrights may apply.
Editors and / or Reviewers 
  • Sang Yup Lee, Editor, Korea Advanced Institute of Science and Technology

Author Information

  1. Mitchell G. Thompsona,b,c,
  2. Jacquelyn M. Blake-Hedgesa,b,d,
  3. Pablo Cruz-Moralesa,b,e,
  4. Jesus F. Barajasb,f,
  5. Samuel C. Currana,b,g,
  6. Christopher B. Eibena,b,j,
  7. Nicholas C. Harrisc,
  8. Veronica T. Benitesa,b,
  9. Jennifer W. Gina,b,
  10. William A. Sharplessa,b,c,
  11. Frederick F. Twiggh,
  12. Will Skyrudd,
  13. Rohith N. Krishnaa,b,d,
  14. Jose Henrique Pereiraa,i,
  15. Edward E. K. Baidooa,b,
  16. Christopher J. Petzolda,b,
  17. Paul D. Adamsa,i,j,
  18. Adam P. Arkinj,k,
  19. Adam M. Deutschbauerc,k,
  20. Jay D. Keaslinga,b,h,j,l
  1. aJoint BioEnergy Institute, Emeryville, California, USA
  2. bBiological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
  3. cDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA
  4. dDepartment of Chemistry, University of California, Berkeley, Berkeley, California, USA
  5. eCentro de Biotecnología FEMSA, Tecnológico de Monterrey, Monterrey, NL, Mexico
  6. fDepartment of Energy Agile BioFoundry, Emeryville, California, USA
  7. gComparative Biochemistry Graduate Group, University of California, Berkeley, Berkeley, California, USA
  8. hDepartment of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California, USA
  9. iMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
  10. jJoint Program in Bioengineering, University of California, Berkeley, Berkeley, California, USA
  11. kEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
  12. lThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kongens Lyngby, Denmark
  • Address correspondence to Jay D. Keasling, jdkeasling{at}lbl.gov.
  • Citation Thompson MG, Blake-Hedges JM, Cruz-Morales P, Barajas JF, Curran SC, Eiben CB, Harris NC, Benites VT, Gin JW, Sharpless WA, Twigg FF, Skyrud W, Krishna RN, Henrique Pereira J, Baidoo EEK, Petzold CJ, Adams PD, Arkin AP, Deutschbauer AM, Keasling JD. 2019. Massively parallel fitness profiling reveals multiple novel enzymes in Pseudomonas putida lysine metabolism. mBio 10:e02577-18. https://doi.org/10.1128/mBio.02577-18.

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Massively Parallel Fitness Profiling Reveals Multiple Novel Enzymes in Pseudomonas putida Lysine Metabolism
Mitchell G. Thompson, Jacquelyn M. Blake-Hedges, Pablo Cruz-Morales, Jesus F. Barajas, Samuel C. Curran, Christopher B. Eiben, Nicholas C. Harris, Veronica T. Benites, Jennifer W. Gin, William A. Sharpless, Frederick F. Twigg, Will Skyrud, Rohith N. Krishna, Jose Henrique Pereira, Edward E. K. Baidoo, Christopher J. Petzold, Paul D. Adams, Adam P. Arkin, Adam M. Deutschbauer, Jay D. Keasling
mBio May 2019, 10 (3) e02577-18; DOI: 10.1128/mBio.02577-18

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Massively Parallel Fitness Profiling Reveals Multiple Novel Enzymes in Pseudomonas putida Lysine Metabolism
Mitchell G. Thompson, Jacquelyn M. Blake-Hedges, Pablo Cruz-Morales, Jesus F. Barajas, Samuel C. Curran, Christopher B. Eiben, Nicholas C. Harris, Veronica T. Benites, Jennifer W. Gin, William A. Sharpless, Frederick F. Twigg, Will Skyrud, Rohith N. Krishna, Jose Henrique Pereira, Edward E. K. Baidoo, Christopher J. Petzold, Paul D. Adams, Adam P. Arkin, Adam M. Deutschbauer, Jay D. Keasling
mBio May 2019, 10 (3) e02577-18; DOI: 10.1128/mBio.02577-18
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KEYWORDS

biochemistry
biotechnology
genomics
metabolism
transposons

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